RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 PQBP1O60828 265 aaKnown RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 RAMP1O60894 148 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 C1QL1O75973 258 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 MPZL1O95297 269 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 OR2C1O95371 312 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 GAPDHP04406 335 aaKnown RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 SFTPBP07988 381 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 SLC35E2P0CK97 266 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 PVRP15151 417 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 CTLA4P16410 223 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 S100A2P29034 98 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 CCR4P51679 360 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 TAS2R60P59551 318 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 LSM6P62312 80 aaKnown RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 DEFB103AP81534 67 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 ZP2Q05996 745 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 ZNF616Q08AN1 781 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 TDGQ13569 410 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 SURF2Q15527 256 aaPredicted RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 ZNHIT3Q15649 155 aaPredicted RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 C1QL3Q5VWW1 255 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 WBP2NLQ6ICG8 309 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 FIGLAQ6QHK4 219 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 MAMDC2Q7Z304 686 aaPredicted RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 BCORP1Q8N888 145 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 C19orf47Q8N9M1 422 aaKnown RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 OR13C9Q8NGT0 318 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 OR13G1Q8NGZ3 307 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 CD300LFQ8TDQ1 290 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 RAB7BQ96AH8 199 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 S100PBPQ96BU1 408 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 NTNG2Q96CW9 530 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 MUCL1Q96DR8 90 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 EIF5A2Q9GZV4 153 aaKnown RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 UCK1Q9HA47 277 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 PHPT1Q9NRX4 125 aaPredicted RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 STARD5Q9NSY2 213 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 CUTCQ9NTM9 273 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 GFOD1Q9NXC2 390 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 ANAPC10Q9UM13 185 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 HHLA2Q9UM44 414 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 SLC17A4Q9Y2C5 497 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 CACNA1IQ9P0X4 2223 aa6.04□□□□□ -1.44
VPS39-202ENST00000348544 MKI67P46013 3256 aaKnown RBP6.04□□□□□ -1.44
VPS39-202ENST00000348544 C5orf42Q9H799 3197 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 P2RY10O00398 339 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 SLC16A7O60669 478 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 RAD51DO75771 328 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 APBB3O95704 486 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 SOD3P08294 240 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 IFI6P09912 130 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 DANCRP0C864 163 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 PET100P0DJ07 73 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 OR13C7P0DN81 318 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 PNMTP11086 282 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 GLRA1P23415 457 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 CLDN6P56747 220 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 FAM3AP98173 230 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 SP3Q02447 781 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 TOMM34Q15785 309 aaPredicted RBP6.03□□□□□ -1.44
VPS39-202ENST00000348544 PLAC9Q5JTB6 97 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 VAX1Q5SQQ9 334 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 FNDC7Q5VTL7 733 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 AADACL3Q5VUY0 350 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 ZNF343Q6P1L6 599 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 ST7LQ8TDW4 575 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 CPNE4Q96A23 557 aaPredicted RBP6.03□□□□□ -1.44
VPS39-202ENST00000348544 GALNT14Q96FL9 552 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 CNTNAP3Q9BZ76 1288 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 ARV1Q9H2C2 271 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 PRO1933Q9H354 126 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 SRMSQ9H3Y6 488 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 FGF22Q9HCT0 170 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 PPP4R1LQ9P1A2 415 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 FBXO7Q9Y3I1 522 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 TMEM184BQ9Y519 407 aaPredicted RBP6.03□□□□□ -1.44
VPS39-202ENST00000348544 FREM3P0C091 2139 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 PRSS37A4D1T9 235 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 C17orf51A8MQB3 221 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 ZNF727A8MUV8 499 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 RPL36A-HNRNPH2H7BZ11 118 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 K7EPK0 472 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 TERTO14746 1132 aaKnown RBP6.03□□□□□ -1.44
VPS39-202ENST00000348544 TNFSF14O43557 240 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 HCRTR1O43613 425 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 HIST1H2BKO60814 126 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 JTBO76095 146 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 HIST1H2BJP06899 126 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 CTSBP07858 339 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 CXCL1P09341 107 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 CSF2RAP15509 400 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 ZNF10P21506 573 aaPredicted RBP6.03□□□□□ -1.44
VPS39-202ENST00000348544 HIST1H2BOP23527 126 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 FPR2P25090 351 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 DDTP30046 118 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 HIST1H2BBP33778 126 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 GABRA4P48169 554 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 SLC26A5P58743 744 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 HIST1H2BDP58876 126 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 HIST1H2BCP62807 126 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms