RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 OR5AS1Q8N127 324 aa17.08■□□□□ 0.33
COL9A3-201ENST00000343916 OR2Y1Q8NGV0 311 aa17.08■□□□□ 0.33
COL9A3-201ENST00000343916 SLC39A7Q92504 469 aa17.08■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF775Q96BV0 537 aaPredicted RBP17.08■□□□□ 0.33
COL9A3-201ENST00000343916 SLC25A21Q9BQT8 299 aaPredicted RBP17.08■□□□□ 0.33
COL9A3-201ENST00000343916 ANGPTL4Q9BY76 406 aa17.08■□□□□ 0.33
COL9A3-201ENST00000343916 MOB1AQ9H8S9 216 aa17.08■□□□□ 0.33
COL9A3-201ENST00000343916 SDHAF2Q9NX18 166 aa17.08■□□□□ 0.33
COL9A3-201ENST00000343916 NSG1A0A0A6YYJ2 146 aa17.08■□□□□ 0.32
COL9A3-201ENST00000343916 A0A1W2PP11 408 aa17.08■□□□□ 0.32
COL9A3-201ENST00000343916 MELTFP08582 738 aa17.08■□□□□ 0.32
COL9A3-201ENST00000343916 ZNF239Q16600 458 aaKnown RBP17.08■□□□□ 0.32
COL9A3-201ENST00000343916 RSPO4Q2I0M5 234 aaPredicted RBP17.08■□□□□ 0.32
COL9A3-201ENST00000343916 GLIPR1L1Q6UWM5 242 aa17.08■□□□□ 0.32
COL9A3-201ENST00000343916 RPS19BP1Q86WX3 136 aaKnown RBP17.08■□□□□ 0.32
COL9A3-201ENST00000343916 IER2Q9BTL4 223 aa17.08■□□□□ 0.32
COL9A3-201ENST00000343916 ALX4Q9H161 411 aaPredicted RBP17.08■□□□□ 0.32
COL9A3-201ENST00000343916 DKKL1Q9UK85 242 aa17.08■□□□□ 0.32
COL9A3-201ENST00000343916 PMS2P2O95744 297 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 CSNK1A1P48729 337 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 CXADRP78310 365 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 MC2RQ01718 297 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 RHOUQ7L0Q8 258 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 CDH26Q8IXH8 852 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 PAQR8Q8TEZ7 354 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 TMPRSS13Q9BYE2 586 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 BANF2Q9H503 90 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 HPF1Q9NWY4 346 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 ZNF230Q9UIE0 474 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-201ENST00000343916 VSIG4Q9Y279 399 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 KCNMB2Q9Y691 235 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 LOC102725191A0A1B0GVB3 256 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 OR14I1A6ND48 311 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 F5H5K5 113 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 TNFSF11O14788 317 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 TLX3O43711 291 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-201ENST00000343916 HOXD4P09016 255 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-201ENST00000343916 DSCR4P56555 118 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-201ENST00000343916 RNASE10Q5GAN6 216 aaKnown RBP17.07■□□□□ 0.32
COL9A3-201ENST00000343916 ALKAL2Q6UX46 152 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 CCDC107Q8WV48 283 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 REG4Q9BYZ8 158 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 SLC39A1Q9NY26 324 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 KIF25Q9UIL4 384 aa17.07■□□□□ 0.32
COL9A3-201ENST00000343916 A0A0A6YYD4 124 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 TMEM14DPA8MWL7 114 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 H3BUI4 141 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 HCKP08631 526 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 HRH1P35367 487 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 CAPZA1P52907 286 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 SORDQ00796 357 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 DHRS2Q13268 280 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 KCNMB1Q16558 191 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 MYO7BQ6PIF6 2116 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 DTX1Q86Y01 620 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 C12orf45Q8N5I9 185 aaPredicted RBP17.06■□□□□ 0.32
COL9A3-201ENST00000343916 COQ8AQ8NI60 647 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 M1APQ8TC57 530 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 MRGPRFQ96AM1 343 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 MRPS28Q9Y2Q9 187 aaKnown RBP17.06■□□□□ 0.32
COL9A3-201ENST00000343916 KCNK7Q9Y2U2 307 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 A0A087WZY1 265 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 NPIPA2E9PIF3 369 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 NPIPA3F8WFD2 350 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 CER1O95813 267 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 MPIG6BO95866 241 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 FKBP2P26885 142 aaKnown RBP17.06■□□□□ 0.32
COL9A3-201ENST00000343916 SLC6A9P48067 706 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 BTN1A1Q13410 526 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 LY6G6FQ5SQ64 297 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 ZBTB44Q8NCP5 570 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 OR10R2Q8NGX6 335 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 NPRL2Q8WTW4 380 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 ZNF837Q96EG3 531 aaPredicted RBP17.06■□□□□ 0.32
COL9A3-201ENST00000343916 LIN37Q96GY3 246 aaPredicted RBP17.06■□□□□ 0.32
COL9A3-201ENST00000343916 C1orf147Q96MC9 270 aaPredicted RBP17.06■□□□□ 0.32
COL9A3-201ENST00000343916 RBM24Q9BX46 236 aaKnown RBP17.06■□□□□ 0.32
COL9A3-201ENST00000343916 PPA2Q9H2U2 334 aa17.06■□□□□ 0.32
COL9A3-201ENST00000343916 A0A0G2JMM0 328 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 A0A1W2PPB8 328 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 A0A1W2PRS3 328 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 OR5H15A6NDH6 313 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 KIR3DP1A8MWS1 328 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 TRIM77I1YAP6 450 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 CD63P08962 238 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 FOLR3P41439 243 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 TRA2AQ13595 282 aaKnown RBP eCLIP17.05■□□□□ 0.32
COL9A3-201ENST00000343916 OR5D18Q8NGL1 313 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 EDEM2Q9BV94 578 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 ARL6Q9H0F7 186 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 LPAR5Q9H1C0 372 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 SH2D2AQ9NP31 389 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 IGKV1-9A0A0C4DH69 117 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 A0A0J9YW62 118 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 SSX5O60225 188 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 HLA-AP01891 365 aaKnown RBP17.05■□□□□ 0.32
COL9A3-201ENST00000343916 ERCC1P07992 297 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-201ENST00000343916 MSR1P21757 451 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 GUCA1AP43080 201 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-201ENST00000343916 DUSP3P51452 185 aaPredicted RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms