RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SOD3P08294 240 aa19■□□□□ 0.63
SDC3-202ENST00000339394 KLF3P57682 345 aaPredicted RBP19■□□□□ 0.63
SDC3-202ENST00000339394 TBCEQ15813 527 aaPredicted RBP19■□□□□ 0.63
SDC3-202ENST00000339394 MST1LQ2TV78 715 aa19■□□□□ 0.63
SDC3-202ENST00000339394 RPL22L1Q6P5R6 122 aaKnown RBP19■□□□□ 0.63
SDC3-202ENST00000339394 MRPL21Q7Z2W9 205 aaKnown RBP19■□□□□ 0.63
SDC3-202ENST00000339394 SOX7Q9BT81 388 aa19■□□□□ 0.63
SDC3-202ENST00000339394 ACOT13Q9NPJ3 140 aa19■□□□□ 0.63
SDC3-202ENST00000339394 ZNF391Q9UJN7 358 aa19■□□□□ 0.63
SDC3-202ENST00000339394 SIRT4Q9Y6E7 314 aaPredicted RBP19■□□□□ 0.63
SDC3-202ENST00000339394 BAHCC1Q9P281 2608 aa19■□□□□ 0.63
SDC3-202ENST00000339394 IGLV3-1P01715 115 aa18.99■□□□□ 0.63
SDC3-202ENST00000339394 IGHV3-13P01766 116 aa18.99■□□□□ 0.63
SDC3-202ENST00000339394 SELENOVP59797 346 aa18.99■□□□□ 0.63
SDC3-202ENST00000339394 EFNB3Q15768 340 aa18.99■□□□□ 0.63
SDC3-202ENST00000339394 OR2T2Q6IF00 324 aa18.99■□□□□ 0.63
SDC3-202ENST00000339394 RDH10Q8IZV5 341 aa18.99■□□□□ 0.63
SDC3-202ENST00000339394 OPA3Q9H6K4 179 aa18.99■□□□□ 0.63
SDC3-202ENST00000339394 ZNF696Q9H7X3 374 aa18.99■□□□□ 0.63
SDC3-202ENST00000339394 GPR84Q9NQS5 396 aa18.99■□□□□ 0.63
SDC3-202ENST00000339394 ST6GALNAC2Q9UJ37 374 aa18.99■□□□□ 0.63
SDC3-202ENST00000339394 UNC79Q9P2D8 2635 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 TRBV2A0A0J9YWF9 115 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 OR4C45A6NMZ5 311 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 B9A039 149 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 P2RY10O00398 339 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 PCMT1P22061 227 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 CFL1P23528 166 aaKnown RBP18.98■□□□□ 0.63
SDC3-202ENST00000339394 EVX1P49640 407 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 FAM3AP98173 230 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 CDK5R1Q15078 307 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 SWI5Q1ZZU3 235 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 ALKBH6Q3KRA9 238 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 SVOPQ8N4V2 548 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 LAMP3Q9UQV4 416 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 A0A1B0GTI1 187 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 hCG_38984A0A1B0GV85 526 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 OGG1O15527 345 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 ZFPL1O95159 310 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 ACSM1Q08AH1 577 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 AGAP6Q5VW22 663 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 C20orf204Q6ZNR8 217 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 DTX2Q86UW9 622 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 COMMD2Q86X83 199 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 ZFP41Q8N8Y5 198 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 TSPAN14Q8NG11 270 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 PDCD1LG2Q9BQ51 273 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 LIME1Q9H400 295 aa18.98■□□□□ 0.63
SDC3-202ENST00000339394 PURGQ9UJV8 347 aaKnown RBP18.98■□□□□ 0.63
SDC3-202ENST00000339394 CD8AP01732 235 aa18.97■□□□□ 0.63
SDC3-202ENST00000339394 UBCP0CG48 685 aaKnown RBP18.97■□□□□ 0.63
SDC3-202ENST00000339394 KITLGP21583 273 aa18.97■□□□□ 0.63
SDC3-202ENST00000339394 GSK3AP49840 483 aa18.97■□□□□ 0.63
SDC3-202ENST00000339394 TAS2R43P59537 309 aa18.97■□□□□ 0.63
SDC3-202ENST00000339394 BDH1Q02338 343 aa18.97■□□□□ 0.63
SDC3-202ENST00000339394 DMKNQ6E0U4 476 aaPredicted RBP18.97■□□□□ 0.63
SDC3-202ENST00000339394 RPS4Y2Q8TD47 263 aa18.97■□□□□ 0.63
SDC3-202ENST00000339394 NRGNQ92686 78 aa18.97■□□□□ 0.63
SDC3-202ENST00000339394 SMIM19Q96E16 107 aa18.97■□□□□ 0.63
SDC3-202ENST00000339394 FAM71F1Q96KD3 344 aaPredicted RBP18.97■□□□□ 0.63
SDC3-202ENST00000339394 CBLN4Q9NTU7 201 aa18.97■□□□□ 0.63
SDC3-202ENST00000339394 TAAR3PQ9P1P4 343 aa18.97■□□□□ 0.63
SDC3-202ENST00000339394 ASH1LQ9NR48 2969 aaKnown RBP18.96■□□□□ 0.63
SDC3-202ENST00000339394 PNMA8CA0A1B0GUJ8 204 aa18.96■□□□□ 0.63
SDC3-202ENST00000339394 A0A1W2PPW3 197 aa18.96■□□□□ 0.63
SDC3-202ENST00000339394 GGT3PA6NGU5 568 aa18.96■□□□□ 0.63
SDC3-202ENST00000339394 TMEM212A6NML5 194 aa18.96■□□□□ 0.63
SDC3-202ENST00000339394 CD300LBA8K4G0 201 aa18.96■□□□□ 0.63
SDC3-202ENST00000339394 TIMM8AO60220 97 aaPredicted RBP18.96■□□□□ 0.63
SDC3-202ENST00000339394 ISG15P05161 165 aa18.96■□□□□ 0.63
SDC3-202ENST00000339394 HSMCR30P0CW71 290 aa18.96■□□□□ 0.63
SDC3-202ENST00000339394 TNK1Q13470 666 aa18.96■□□□□ 0.63
SDC3-202ENST00000339394 OR5AS1Q8N127 324 aa18.96■□□□□ 0.63
SDC3-202ENST00000339394 ZNF676Q8N7Q3 588 aa18.96■□□□□ 0.63
SDC3-202ENST00000339394 PLPP7Q8NBV4 271 aa18.96■□□□□ 0.63
SDC3-202ENST00000339394 BHLHE23Q8NDY6 225 aa18.96■□□□□ 0.63
SDC3-202ENST00000339394 OR5AK2Q8NH90 309 aa18.96■□□□□ 0.63
SDC3-202ENST00000339394 A0A087WXM4 84 aa18.95■□□□□ 0.62
SDC3-202ENST00000339394 H3BSH0 61 aa18.95■□□□□ 0.62
SDC3-202ENST00000339394 SELEP16581 610 aa18.95■□□□□ 0.62
SDC3-202ENST00000339394 CELP19835 753 aa18.95■□□□□ 0.62
SDC3-202ENST00000339394 ACKR3P25106 362 aa18.95■□□□□ 0.62
SDC3-202ENST00000339394 OR8B8Q15620 311 aa18.95■□□□□ 0.62
SDC3-202ENST00000339394 TMEM244Q5VVB8 128 aa18.95■□□□□ 0.62
SDC3-202ENST00000339394 MGLLQ99685 303 aa18.95■□□□□ 0.62
SDC3-202ENST00000339394 TRAF4Q9BUZ4 470 aaPredicted RBP18.95■□□□□ 0.62
SDC3-202ENST00000339394 IQCF6A8MYZ5 107 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 SYT7O43581 403 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 PLPP2O43688 288 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 LILRA1O75019 489 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 DHRS3O75911 302 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 CCL1P22362 96 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 ALDH3B1P43353 468 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 MMP15P51511 669 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 SLC3A1Q07837 685 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 MOGQ16653 247 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 NKPD1Q17RQ9 610 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 C11orf71Q6IPW1 123 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 DOK3Q7L591 496 aa18.94■□□□□ 0.62
SDC3-202ENST00000339394 ZNF367Q7RTV3 350 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms