RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 G6PCP35575 357 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 SLC45A2Q9UMX9 530 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 FOXJ3Q9UPW0 622 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 P2RY10O00398 339 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 ZNF17P17021 662 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 FPR2P25090 351 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 PPOXP50336 477 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 CARD18P57730 90 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 COL9A3Q14050 684 aaPredicted RBP13.01□□□□□ -0.33
COL7A1-201ENST00000328333 FDX2Q6P4F2 183 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 LRP11Q86VZ4 500 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 TMEM255BQ8WV15 326 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 COX7A2P2O60397 106 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 HERVK_113P61574 105 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 MAVSQ7Z434 540 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 NIPSNAP1Q9BPW8 284 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 TEX101Q9BY14 249 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 ACER3Q9NUN7 267 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 HCRTR1O43613 425 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 HPP00738 406 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 RACK1P63244 317 aaKnown RBP13.01□□□□□ -0.33
COL7A1-201ENST00000328333 SPANXN5Q5MJ07 72 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 COL5A1-AS1Q5SY13 56 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 IER5LQ5T953 404 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 MFSD12Q6NUT3 480 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 TEAD3Q99594 435 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 GNB4Q9HAV0 340 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 LHX3Q9UBR4 397 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 ALS2Q96Q42 1657 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 ZNF646O15015 1829 aaPredicted RBP13.01□□□□□ -0.33
COL7A1-201ENST00000328333 HOXC5Q00444 222 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 OR2T6Q8NHC8 308 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 UTP23Q9BRU9 249 aaKnown RBP13.01□□□□□ -0.33
COL7A1-201ENST00000328333 ANKRD34CP0C6C1 535 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 IGSF11Q5DX21 431 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 TTC9Q92623 222 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 MAP1LC3CQ9BXW4 147 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 PLA2G12AQ9BZM1 189 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 TMEM191AQ9H0A3 160 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 TMED7-TICAM2A0A0A6YYA0 188 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 DUS4LO95620 317 aaKnown RBP13.01□□□□□ -0.33
COL7A1-201ENST00000328333 P2RY2P41231 377 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 DIO1P49895 249 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 ZNF789Q5FWF6 425 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 LCN15Q6UWW0 184 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 SLCO4C1Q6ZQN7 724 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 PSENENQ9NZ42 101 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 TMED7Q9Y3B3 224 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 CDRT15L2A8MXV6 281 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 UBALD1Q8TB05 177 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 R4GMQ9 66 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 HAND1O96004 215 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 FAHD1Q6P587 224 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 C16orf70Q9BSU1 422 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 ZMAT3Q9HA38 289 aaKnown RBP13□□□□□ -0.33
COL7A1-201ENST00000328333 CSNK1G1Q9HCP0 422 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 IGKV6-21A0A0C4DH24 114 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 TMEM268Q5VZI3 342 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 C19orf47Q8N9M1 422 aaKnown RBP13□□□□□ -0.33
COL7A1-201ENST00000328333 FZD9O00144 591 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 MDH2P40926 338 aaKnown RBP13□□□□□ -0.33
COL7A1-201ENST00000328333 TRAT1Q6PIZ9 186 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 PDXPQ96GD0 296 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 ADGRG7Q96K78 797 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 MARVELD1Q9BSK0 173 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 SERTM2A0A1B0GWG4 89 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 FIGNL2A6NMB9 653 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 DLEU7Q6UYE1 221 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 ATP5SQ99766 215 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 Q6ZSR6 202 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 ARFGAP1Q8N6T3 406 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 NXF2Q9GZY0 626 aaKnown RBP13□□□□□ -0.33
COL7A1-201ENST00000328333 ZNF552Q9H707 407 aaPredicted RBP13□□□□□ -0.33
COL7A1-201ENST00000328333 LRIT1Q9P2V4 623 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 SCN7AQ01118 1682 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 TMEM265A0A087WTH1 108 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 SELENOFO60613 162 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 NDUFB6O95139 128 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 PMCHP20382 165 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 KIAA1958Q8N8K9 716 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 OR51H1Q8NH63 302 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 GLIPR2Q9H4G4 154 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 PITPNC1Q9UKF7 332 aa13□□□□□ -0.33
COL7A1-201ENST00000328333 ZNF816-ZNF321PA0A0X1KG74 233 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 H0YGG7 62 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 MDGA1Q8NFP4 955 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 HSD17B8Q92506 261 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 HEMK1Q9Y5R4 338 aaPredicted RBP12.99□□□□□ -0.33
COL7A1-201ENST00000328333 RRP8O43159 456 aaKnown RBP12.99□□□□□ -0.33
COL7A1-201ENST00000328333 SMAGPQ0VAQ4 97 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 CTF1Q16619 201 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 MEX3DQ86XN8 651 aaKnown RBP12.99□□□□□ -0.33
COL7A1-201ENST00000328333 Q9N2K0 584 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 TAS2R4Q9NYW5 299 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 IL10RAQ13651 578 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 OR2W3Q7Z3T1 314 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 OR5D13Q8NGL4 314 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 POM121L2Q96KW2 1035 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 ANGPTL4Q9BY76 406 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 UBE2ZQ9H832 354 aaPredicted RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms