RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 C1orf146Q5VVC0 180 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 FAM57BQ71RH2 274 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 SHFQ7M4L6 423 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 RFLNBQ8N5W9 214 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 C19orf18Q8NEA5 215 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 OR5K1Q8NHB7 308 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 OTOSQ8NHW6 89 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 NRBF2Q96F24 287 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 KRTAP3-3Q9BYR6 98 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 KRTAP3-2Q9BYR7 98 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 TOR3AQ9H497 397 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 TVP23BQ9NYZ1 205 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 DOCK11Q5JSL3 2073 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 XRCC2O43543 280 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 TCF21O43680 179 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 LYNP07948 512 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 H2BFMP0C1H6 154 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 CRISP1P54107 249 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 APOFQ13790 326 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 SNAPC1Q16533 368 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 TIGD6Q17RP2 521 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 ZNF181Q2M3W8 571 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 GFOD2Q3B7J2 385 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 CCDC121Q6ZUS5 278 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 SLC16A9Q7RTY1 509 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 PRSS45Q7RTY3 260 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 C1QL2Q7Z5L3 287 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 AMIGO2Q86SJ2 522 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 MUC20Q8N307 709 aaPredicted RBP13.67□□□□□ -0.22
LSM1-201ENST00000311351 CELF2-AS1Q8N7Q2 184 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 DNAJC9Q8WXX5 260 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 SPSB4Q96A44 273 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 C19orf24Q9BVV8 132 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 OPA3Q9H6K4 179 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 TMEM165Q9HC07 324 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 MMP26Q9NRE1 261 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 MRPL15Q9P015 296 aaKnown RBP13.67□□□□□ -0.22
LSM1-201ENST00000311351 ZNF319Q9P2F9 582 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 OPN4Q9UHM6 478 aa13.67□□□□□ -0.22
LSM1-201ENST00000311351 hCG_38984A0A1B0GV85 526 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 CCDC182A6NF36 153 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 LRRC30A6NM36 301 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 A8MXK9 166 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 TRAPPC2LH3BP13 241 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 J3QLI3 93 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 MRPL3P09001 348 aaKnown RBP13.66□□□□□ -0.22
LSM1-201ENST00000311351 RPS2P15880 293 aaKnown RBP13.66□□□□□ -0.22
LSM1-201ENST00000311351 SLC35D3Q5M8T2 416 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 LRRN1Q6UXK5 716 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 C1orf87Q8N0U7 546 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 PARP8Q8N3A8 854 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 Q8TCH9 128 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 THEM6Q8WUY1 208 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 REEP6Q96HR9 211 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 TMEM246Q9BRR3 403 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 SLC22A4Q9H015 551 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 C7orf69Q9H7B7 122 aa13.66□□□□□ -0.22
LSM1-201ENST00000311351 NOP16Q9Y3C1 178 aaKnown RBP13.66□□□□□ -0.22
LSM1-201ENST00000311351 PPIAL4EA0A075B759 164 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 PPIAL4DF5H284 164 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 PRKYO43930 277 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 PPIAL4FP0DN26 164 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 IRF2P14316 349 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 EPHA1P21709 976 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 GATA3P23771 443 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 EPHA2P29317 976 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 CD80P33681 288 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 HCCSP53701 268 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 FAM3AP98173 230 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 PTGES3Q15185 160 aaKnown RBP13.65□□□□□ -0.22
LSM1-201ENST00000311351 ZNF404Q494X3 552 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 ESCO2Q56NI9 601 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 BCDIN3DQ7Z5W3 292 aaKnown RBP13.65□□□□□ -0.22
LSM1-201ENST00000311351 KLBQ86Z14 1044 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 ZNF454Q8N9F8 522 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 DEFB108BQ8NET1 73 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 OR11L1Q8NGX0 322 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 LRTOMTQ8WZ04 291 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 SGK3Q96BR1 496 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 PGAM5Q96HS1 289 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 TEX12Q9BXU0 123 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 TTTY10Q9BZA0 68 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 GABARAPL1Q9H0R8 117 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 PPP1R3EQ9H7J1 279 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 KRT84Q9NSB2 600 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 PPIAL4AQ9Y536 164 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 AP4S1Q9Y587 144 aa13.65□□□□□ -0.22
LSM1-201ENST00000311351 PPIAL4CA0A0B4J2A2 164 aa13.64□□□□□ -0.23
LSM1-201ENST00000311351 PRR32B1ATL7 298 aa13.64□□□□□ -0.23
LSM1-201ENST00000311351 G3V2T6 193 aa13.64□□□□□ -0.23
LSM1-201ENST00000311351 EBAG9O00559 213 aa13.64□□□□□ -0.23
LSM1-201ENST00000311351 GMDSO60547 372 aa13.64□□□□□ -0.23
LSM1-201ENST00000311351 CIB2O75838 187 aa13.64□□□□□ -0.23
LSM1-201ENST00000311351 VENTXO95231 258 aa13.64□□□□□ -0.23
LSM1-201ENST00000311351 PTBP3O95758 552 aaKnown RBP13.64□□□□□ -0.23
LSM1-201ENST00000311351 APOC1P02654 83 aa13.64□□□□□ -0.23
LSM1-201ENST00000311351 WNT2P09544 360 aa13.64□□□□□ -0.23
LSM1-201ENST00000311351 FASP25445 335 aa13.64□□□□□ -0.23
LSM1-201ENST00000311351 LIPNQ5VXI9 398 aa13.64□□□□□ -0.23
LSM1-201ENST00000311351 LYPD2Q6UXB3 125 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms