RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 MRGPRFQ96AM1 343 aa17.69■□□□□ 0.42
VPS53-201ENST00000291074 TMPRSS13Q9BYE2 586 aa17.69■□□□□ 0.42
VPS53-201ENST00000291074 BANF2Q9H503 90 aa17.69■□□□□ 0.42
VPS53-201ENST00000291074 VSIG4Q9Y279 399 aa17.69■□□□□ 0.42
VPS53-201ENST00000291074 OR14I1A6ND48 311 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 NPIPA2E9PIF3 369 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 NPIPA3F8WFD2 350 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 HCKP08631 526 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 CAPZA1P52907 286 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 CXADRP78310 365 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 RNASE10Q5GAN6 216 aaKnown RBP17.68■□□□□ 0.42
VPS53-201ENST00000291074 TCEAL6Q6IPX3 200 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 RHOUQ7L0Q8 258 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 CCDC107Q8WV48 283 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 TCEAL3Q969E4 200 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 C1orf147Q96MC9 270 aaPredicted RBP17.68■□□□□ 0.42
VPS53-201ENST00000291074 ALX4Q9H161 411 aaPredicted RBP17.68■□□□□ 0.42
VPS53-201ENST00000291074 LPAR5Q9H1C0 372 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 MAB21L2Q9Y586 359 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 F5H5K5 113 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 SSX5O60225 188 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 MPIG6BO95866 241 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 MSR1P21757 451 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 OTX2P32243 289 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 ENDOGQ14249 297 aaKnown RBP17.68■□□□□ 0.42
VPS53-201ENST00000291074 C12orf45Q8N5I9 185 aaPredicted RBP17.68■□□□□ 0.42
VPS53-201ENST00000291074 OR9K2Q8NGE7 335 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 OR10R2Q8NGX6 335 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 NPRL2Q8WTW4 380 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 ZNF837Q96EG3 531 aaPredicted RBP17.68■□□□□ 0.42
VPS53-201ENST00000291074 SRXN1Q9BYN0 137 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 KCNK7Q9Y2U2 307 aa17.68■□□□□ 0.42
VPS53-201ENST00000291074 IGKV1-9A0A0C4DH69 117 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 H3BUI4 141 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 ERCC1P07992 297 aaPredicted RBP17.67■□□□□ 0.42
VPS53-201ENST00000291074 POU3F2P20265 443 aaPredicted RBP17.67■□□□□ 0.42
VPS53-201ENST00000291074 SORDQ00796 357 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 DHRS2Q13268 280 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 CCDC157Q569K6 752 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 LY6G6FQ5SQ64 297 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 LYZL4Q96KX0 146 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 EDEM2Q9BV94 578 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 RBM24Q9BX46 236 aaKnown RBP17.67■□□□□ 0.42
VPS53-201ENST00000291074 ZNF230Q9UIE0 474 aaPredicted RBP17.67■□□□□ 0.42
VPS53-201ENST00000291074 HRH1P35367 487 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 SLC6A9P48067 706 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 CLLU1Q5K131 121 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 C1orf210Q8IVY1 113 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 TMEM123Q8N131 208 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 OR5D18Q8NGL1 313 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 TMEM54Q969K7 222 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 NABP1Q96AH0 204 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 PGAM5Q96HS1 289 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 NELFAQ9H3P2 528 aa17.67■□□□□ 0.42
VPS53-201ENST00000291074 SOCS1O15524 211 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 CCL1P22362 96 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 CD96P40200 585 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 GRB2P62993 217 aaKnown RBP17.66■□□□□ 0.42
VPS53-201ENST00000291074 IKZF1Q13422 519 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 TOR2AQ5JU69 321 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 DOK3Q7L591 496 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 YRDCQ86U90 279 aaKnown RBP17.66■□□□□ 0.42
VPS53-201ENST00000291074 STEAP2Q8NFT2 490 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 OR14K1Q8NGZ2 314 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 IFT46Q9NQC8 304 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 ZNF107Q9UII5 783 aaPredicted RBP17.66■□□□□ 0.42
VPS53-201ENST00000291074 COL27A1Q8IZC6 1860 aaPredicted RBP17.66■□□□□ 0.42
VPS53-201ENST00000291074 DISC1C4P0D8 188 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 ZXDAP98168 799 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 Q0VFX4 171 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 C3P1Q6ZMU1 363 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 IQCF2Q8IXL9 164 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 ZIC4Q8N9L1 334 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 NTNG2Q96CW9 530 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 TMEM41AQ96HV5 264 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 GPER1Q99527 375 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 AUP1Q9Y679 476 aa17.66■□□□□ 0.42
VPS53-201ENST00000291074 DBHP09172 617 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 GUCA1AP43080 201 aaPredicted RBP17.65■□□□□ 0.42
VPS53-201ENST00000291074 LSM6P62312 80 aaKnown RBP17.65■□□□□ 0.42
VPS53-201ENST00000291074 HLXQ14774 488 aaPredicted RBP17.65■□□□□ 0.42
VPS53-201ENST00000291074 MEF2DQ14814 521 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 PLAC9Q5JTB6 97 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 C10orf128Q5T292 105 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 PGAP1Q75T13 922 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 PPP1R32Q7Z5V6 425 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 COMMD7Q86VX2 200 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 ZC3H10Q96K80 434 aaKnown RBP17.65■□□□□ 0.42
VPS53-201ENST00000291074 DOCK10Q96BY6 2186 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 CDC14BO60729 498 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 EIF1BO60739 113 aaKnown RBP17.65■□□□□ 0.42
VPS53-201ENST00000291074 STK17BO94768 372 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 HLA-AP01891 365 aaKnown RBP17.65■□□□□ 0.42
VPS53-201ENST00000291074 TMUB2Q71RG4 321 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 PCSK5Q92824 1860 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 CCSO14618 274 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 DHHO43323 396 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 PPP3CBP16298 524 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 S100A11P31949 105 aa17.65■□□□□ 0.42
VPS53-201ENST00000291074 CASRP41180 1078 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms