RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 TRIM77I1YAP6 450 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 LRP3O75074 770 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 GABRG2P18507 467 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 SCGB2A2Q13296 93 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 CLLU1Q5K131 121 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 LSRQ86X29 649 aaPredicted RBP9.7□□□□□ -0.86
CD44-201ENST00000263398 RBMXL3Q8N7X1 1067 aaKnown RBP9.7□□□□□ -0.86
CD44-201ENST00000263398 IFI44Q8TCB0 444 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 KCNE4Q8WWG9 221 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 C4orf45Q96LM5 186 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 C10orf90Q96M02 699 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 IP6K3Q96PC2 410 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 SERGEFQ9UGK8 458 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 APC2O95996 2303 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 QSER1Q2KHR3 1735 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 UMAD1C9J7I0 102 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 H7BYZ3 331 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 ADAM10O14672 748 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 SELEP16581 610 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 CHRNB4P30926 498 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 ARR3P36575 388 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 GPR3P46089 330 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 BAMBIQ13145 260 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 CATSPERDQ86XM0 798 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 C1orf87Q8N0U7 546 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 FBXW5Q969U6 566 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 MARVELD1Q9BSK0 173 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 RIMS4Q9H426 269 aaPredicted RBP9.7□□□□□ -0.86
CD44-201ENST00000263398 SIRT3Q9NTG7 399 aaPredicted RBP9.7□□□□□ -0.86
CD44-201ENST00000263398 KLF13Q9Y2Y9 288 aaPredicted RBP9.7□□□□□ -0.86
CD44-201ENST00000263398 LRP12Q9Y561 859 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 PCM1Q15154 2024 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 FAM221AA4D161 298 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 ELLP55199 621 aaPredicted RBP9.69□□□□□ -0.86
CD44-201ENST00000263398 GUCA2AQ02747 115 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 FAM199XQ6PEV8 388 aaPredicted RBP9.69□□□□□ -0.86
CD44-201ENST00000263398 SPACA9Q96E40 222 aaPredicted RBP9.69□□□□□ -0.86
CD44-201ENST00000263398 REEP6Q96HR9 211 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 MTFP1Q9UDX5 166 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 RFPL4AA6NLU0 287 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 PPP5D1E7EU14 171 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 RFPL4AL1F8VTS6 287 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 BCL2L11O43521 198 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 OR8U8P0C7N1 319 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 EMP3P54852 163 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 SCAND1P57086 179 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 OR8G1Q15617 311 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 ELFN2Q5R3F8 820 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 PRAMEF5Q5TYX0 476 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 PRAMEF6Q5VXH4 476 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 DEGS2Q6QHC5 323 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 SLC25A26Q70HW3 274 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 OR5AS1Q8N127 324 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 SPEM1Q8N4L4 309 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 GPR119Q8TDV5 335 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 LRRC61Q9BV99 259 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 DNAJB12Q9NXW2 375 aaKnown RBP9.69□□□□□ -0.86
CD44-201ENST00000263398 GAB2Q9UQC2 676 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 ST3GAL6Q9Y274 331 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 CCL27Q9Y4X3 112 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 SPTA1P02549 2419 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 LRRC37AA6NMS7 1700 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 NPIPB8E9PQR5 432 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 CBR3O75828 277 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 OR2C1O95371 312 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 PIGPP57054 158 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 TIAL1Q01085 375 aaKnown RBP eCLIP9.69□□□□□ -0.86
CD44-201ENST00000263398 OR8B8Q15620 311 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 ZNF239Q16600 458 aaKnown RBP9.69□□□□□ -0.86
CD44-201ENST00000263398 WDR38Q5JTN6 314 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 UBE2ZQ9H832 354 aaPredicted RBP9.69□□□□□ -0.86
CD44-201ENST00000263398 CRLF2Q9HC73 371 aa9.69□□□□□ -0.86
CD44-201ENST00000263398 SH2D1BO14796 132 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 ENSAO43768 121 aaKnown RBP9.68□□□□□ -0.86
CD44-201ENST00000263398 PTAFRP25105 342 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 AANATQ16613 207 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 SPANXN5Q5MJ07 72 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 FAM74A1Q5RGS3 127 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 VN1R4Q7Z5H5 301 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 BAGE3Q86Y29 109 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 BAGE2Q86Y30 109 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 TINAGL1Q9GZM7 467 aaPredicted RBP9.68□□□□□ -0.86
CD44-201ENST00000263398 TMEM231Q9H6L2 316 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 ADGRL4Q9HBW9 690 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 C20orf202A1L168 122 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 OR6C68A6NDL8 312 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 CT45A6P0DMU7 189 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 CT45A5P0DMU8 189 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 CT45A7P0DMV0 189 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 CT45A8P0DMV1 189 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 CT45A9P0DMV2 189 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 THBS4P35443 961 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 CT45A2Q5DJT8 189 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 CT45A1Q5HYN5 189 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 RPUSD3Q6P087 351 aaKnown RBP9.68□□□□□ -0.86
CD44-201ENST00000263398 THSD4Q6ZMP0 1018 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 NAA40Q86UY6 237 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 CT45A3Q8NHU0 189 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 COX14Q96I36 57 aa9.68□□□□□ -0.86
CD44-201ENST00000263398 DHRS9Q9BPW9 319 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms