RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 KIR3DL2P43630 455 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 MLLT11Q13015 90 aaPredicted RBP10.6□□□□□ -0.71
LINC00339-213ENST00000642137 SNTB2Q13425 540 aaKnown RBP10.6□□□□□ -0.71
LINC00339-213ENST00000642137 TPBGQ13641 420 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 CDK5R1Q15078 307 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 ZNF718Q3SXZ3 478 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 GLYATL3Q5SZD4 288 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 SYT6Q5T7P8 510 aaPredicted RBP10.6□□□□□ -0.71
LINC00339-213ENST00000642137 BCL2L15Q5TBC7 163 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 TMEM244Q5VVB8 128 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 DMKNQ6E0U4 476 aaPredicted RBP10.6□□□□□ -0.71
LINC00339-213ENST00000642137 XAF1Q6GPH4 301 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 RGS7BPQ6MZT1 257 aaPredicted RBP10.6□□□□□ -0.71
LINC00339-213ENST00000642137 FBXW12Q6X9E4 464 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 RFPL4BQ6ZWI9 263 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 CCDC54Q8NEL0 328 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 LILRB1Q8NHL6 650 aaPredicted RBP10.6□□□□□ -0.71
LINC00339-213ENST00000642137 SLC25A40Q8TBP6 338 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 AKAP1Q92667 903 aaKnown RBP eCLIP10.6□□□□□ -0.71
LINC00339-213ENST00000642137 MARS2Q96GW9 593 aaKnown RBP10.6□□□□□ -0.71
LINC00339-213ENST00000642137 HS3ST6Q96QI5 342 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 REPIN1Q9BWE0 567 aaKnown RBP10.6□□□□□ -0.71
LINC00339-213ENST00000642137 MRPS26Q9BYN8 205 aaKnown RBP10.6□□□□□ -0.71
LINC00339-213ENST00000642137 OR51B6Q9H340 312 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 OPA3Q9H6K4 179 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 ZNF442Q9H7R0 627 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 VCX3AQ9NNX9 186 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 PLEKHB1Q9UF11 243 aaPredicted RBP10.6□□□□□ -0.71
LINC00339-213ENST00000642137 POU2F3Q9UKI9 436 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 GTF2A1LQ9UNN4 478 aa10.6□□□□□ -0.71
LINC00339-213ENST00000642137 SIRT4Q9Y6E7 314 aaPredicted RBP10.6□□□□□ -0.71
LINC00339-213ENST00000642137 USP9XQ93008 2570 aaPredicted RBP10.59□□□□□ -0.71
LINC00339-213ENST00000642137 C5orf63A6NC05 138 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 TMEM212A6NML5 194 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 E7EQL1 145 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 HSMCR30P0CW71 290 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 SMIM18P0DKX4 95 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 RAC2P15153 192 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 ATP6V1B1P15313 513 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 ZNF250P15622 560 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 CPEP16870 476 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 CELP19835 753 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 GCH1P30793 250 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 APOBEC3AP31941 199 aaPredicted RBP10.59□□□□□ -0.71
LINC00339-213ENST00000642137 THBS4P35443 961 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 ZNF92Q03936 586 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 DOC2BQ14184 412 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 GK2Q14410 553 aaPredicted RBP10.59□□□□□ -0.71
LINC00339-213ENST00000642137 TIGD6Q17RP2 521 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 ZNF672Q499Z4 452 aaPredicted RBP10.59□□□□□ -0.71
LINC00339-213ENST00000642137 ARMCX4Q5H9R4 360 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 MBNL2Q5VZF2 373 aaKnown RBP10.59□□□□□ -0.71
LINC00339-213ENST00000642137 Q6ZSR3 168 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 PLPP7Q8NBV4 271 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 KBTBD8Q8NFY9 601 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 OR5AK2Q8NH90 309 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 TMEM171Q8WVE6 324 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 HAVCR1Q96D42 359 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 SMIM19Q96E16 107 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 C14orf79Q96F83 325 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 REEP6Q96HR9 211 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 DHRS9Q9BPW9 319 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 OR2J1Q9GZK6 312 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 COMMD4Q9H0A8 199 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 POFUT1Q9H488 388 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 CA10Q9NS85 328 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 CISD1Q9NZ45 108 aaKnown RBP10.59□□□□□ -0.71
LINC00339-213ENST00000642137 PTTG3PQ9NZH4 202 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 CMAHPQ9Y471 501 aa10.59□□□□□ -0.71
LINC00339-213ENST00000642137 ICE1Q9Y2F5 2266 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 A0A1B0GTI1 187 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 LOC390937A0A1W2PQ73 354 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 GPRIN2O60269 458 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 MTRF1O75570 445 aaKnown RBP10.58□□□□□ -0.72
LINC00339-213ENST00000642137 CTAG2O75638 210 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 INMTO95050 263 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 ZFPL1O95159 310 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 CLPTM1O96005 669 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 UBCP0CG48 685 aaKnown RBP10.58□□□□□ -0.72
LINC00339-213ENST00000642137 SELEP16581 610 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 ZNF12P17014 697 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 CD53P19397 219 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 CCL1P22362 96 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 ANOS1P23352 680 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 COL8A1P27658 744 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 DDOSTP39656 456 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 EVX1P49640 407 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 FABP6P51161 128 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 SELENOVP59797 346 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 ERVS71-1P61550 626 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 FAM3AP98173 230 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 TLE4Q04727 773 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 NEDD8Q15843 81 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 PGAP1Q75T13 922 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 DOK3Q7L591 496 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 ZNF295-AS1Q8N0V1 137 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 MS4A15Q8N5U1 240 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 ZNF676Q8N7Q3 588 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 ZFP41Q8N8Y5 198 aa10.58□□□□□ -0.72
LINC00339-213ENST00000642137 OR2AE1Q8NHA4 323 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms