RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 AIF1P55008 147 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 FOXA1P55317 472 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 ACTR1AP61163 376 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 RPL23AP62750 156 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 FMODQ06828 376 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CYP24A1Q07973 514 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 BST1Q10588 318 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 BST2Q10589 180 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 TWF1Q12792 350 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TCP10Q12799 353 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 FOXF1Q12946 379 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 DMC1Q14565 340 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 NCF4Q15080 339 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 ZNF181Q2M3W8 571 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 SLC25A35Q3KQZ1 300 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 LUZP6Q538Z0 58 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 KLHL12Q53G59 568 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 YIF1BQ5BJH7 314 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TCEAL5Q5H9L2 206 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 GCSAMLQ5JQS6 135 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CFAP157Q5JU67 520 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CCNJQ5T5M9 372 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 ZNF660Q6AZW8 331 aaPredicted RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 ZFAND6Q6FIF0 208 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 APOBEC3HQ6NTF7 200 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 FAM131AQ6UXB0 335 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 NPSR1Q6W5P4 371 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 MBOAT1Q6ZNC8 495 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 RTL4Q6ZR62 310 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 Q6ZRU5 148 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 USP50Q70EL3 339 aaPredicted RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 FA2HQ7L5A8 372 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TMEM150AQ86TG1 271 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CDR2LQ86X02 465 aaPredicted RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 LYPD6Q86Y78 171 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 SGPP2Q8IWX5 399 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 BBS7Q8IWZ6 715 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 PRSS58Q8IYP2 241 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 FAM71AQ8IYT1 594 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 DRAM1Q8N682 238 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 LINC00469Q8N7U9 141 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 LRRC75AQ8NAA5 344 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 Q8NAQ8 132 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CHST4Q8NCG5 386 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 GPR26Q8NDV2 337 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 SLC26A10Q8NG04 563 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 OR5AR1Q8NGP9 310 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 OR1J4Q8NGS1 313 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 OR5B3Q8NH48 314 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 OR10G6Q8NH81 332 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 ENKURQ8TC29 256 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 PHOSPHO2Q8TCD6 241 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 SLC7A13Q8TCU3 470 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CXorf40AQ8TE69 158 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 LRRC29Q8WV35 223 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CAPSLQ8WWF8 208 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 ZNF606Q8WXB4 792 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 KIFAP3Q92845 792 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TNFRSF14Q92956 283 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TCEAL3Q969E4 200 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TRIM44Q96DX7 344 aaPredicted RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 NRBF2Q96F24 287 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CNDP1Q96KN2 507 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 IGF2BP2-AS1Q96M15 143 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 C20orf166-AS1Q96NR2 134 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 OR4K3Q96R72 315 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 ATP5SQ99766 215 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 SLC29A1Q99808 456 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 MICU1Q9BPX6 476 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 MARVELD1Q9BSK0 173 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 MS4A8Q9BY19 250 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 ILKAPQ9H0C8 392 aaPredicted RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 VCX2Q9H322 139 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TMEM38AQ9H6F2 299 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TMEM27Q9HBJ8 222 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TMEM165Q9HC07 324 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CSNK1G1Q9HCP0 422 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 ZNF302Q9NR11 478 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 FAM49BQ9NUQ9 324 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 RBFOX1Q9NWB1 397 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 RHBDL2Q9NX52 303 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 SLC2A8Q9NY64 477 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TAS2R5Q9NYW4 299 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TAS2R1Q9NYW7 299 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 ENOPH1Q9UHY7 261 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 IKZF2Q9UKS7 526 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 NUP50Q9UKX7 468 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CLEC4AQ9UMR7 237 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 FARSAQ9Y285 508 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 ZNF257Q9Y2Q1 563 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 YARS2Q9Y2Z4 477 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 GOLT1BQ9Y3E0 138 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 ZNF337Q9Y3M9 751 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 AMMECR1Q9Y4X0 333 aaPredicted RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 LRRC42Q9Y546 428 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 DDX49Q9Y6V7 483 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 APCP25054 2843 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 DOCK10Q96BY6 2186 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 DENND4AQ7Z401 1863 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 FHOD3Q2V2M9 1422 aa0.05□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms