RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 OR52D1Q9H346 318 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 TMEM165Q9HC07 324 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 RYR2Q92736 4967 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 ZNF816-ZNF321PA0A0X1KG74 233 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 IDH3BO43837 385 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 KRT36O76013 467 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 RENP00797 406 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 TNFSF4P23510 183 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 GSSP48637 474 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 EGR3Q06889 387 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 CCDC92Q53HC0 331 aaPredicted RBP13.53□□□□□ -0.24
CLN3-264ENST00000637985 LDLRAD3Q86YD5 345 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 ZDHHC21Q8IVQ6 265 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 GJC3Q8NFK1 279 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 GNPDA2Q8TDQ7 276 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 PTP4A1Q93096 173 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 HAVCR1Q96D42 359 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 ACOXLQ9NUZ1 547 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 MIOXQ9UGB7 285 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 B9D1Q9UPM9 204 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 PPP1R3CQ9UQK1 317 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 POLR1DQ9Y2S0 133 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 STARD10Q9Y365 291 aa13.53□□□□□ -0.24
CLN3-264ENST00000637985 IGLV1-36A0A0B4J1U3 117 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 CENPVL3A0A0U1RRI6 287 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 RER1O15258 196 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 HMGA2P52926 109 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 HIST1H3AP68431 136 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 TSPAN31Q12999 210 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 HERPUD1Q15011 391 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 HIST2H3PS2Q5TEC6 136 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 SLC27A4Q6P1M0 643 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 HIST2H3AQ71DI3 136 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 LINC00471Q8N535 108 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 OR5L1Q8NGL2 311 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 SLC7A6Q92536 515 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 CMBLQ96DG6 245 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 NEIL1Q96FI4 390 aaPredicted RBP13.52□□□□□ -0.25
CLN3-264ENST00000637985 TSSK2Q96PF2 358 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 NMNAT3Q96T66 252 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 COQ7Q99807 217 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 IFT27Q9BW83 186 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 HDHD2Q9H0R4 259 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 POFUT1Q9H488 388 aa13.52□□□□□ -0.25
CLN3-264ENST00000637985 SRA1Q9HD15 236 aaKnown RBP13.52□□□□□ -0.25
CLN3-264ENST00000637985 P2RY10O00398 339 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 DCTN6O00399 190 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 SFTPBP07988 381 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 RAC2P15153 192 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 HIST1H1CP16403 213 aaKnown RBP13.51□□□□□ -0.25
CLN3-264ENST00000637985 NOS3P29474 1203 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 CENPAP49450 140 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 COX10Q12887 443 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 SLC36A3Q495N2 470 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 OTPQ5XKR4 325 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 RPL13AP3Q6NVV1 102 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 Q6ZTK2 550 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 ZBTB46Q86UZ6 589 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 OR6V1Q8N148 313 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 ARHGAP24Q8N264 748 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 OR2Z1Q8NG97 314 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 OR4K13Q8NH42 304 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 ITLN1Q8WWA0 313 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 GATAD2BQ8WXI9 593 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 PCGF1Q9BSM1 259 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 ACTR3BQ9P1U1 418 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 IL19Q9UHD0 177 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 LHFPL6Q9Y693 200 aa13.51□□□□□ -0.25
CLN3-264ENST00000637985 SURF4O15260 269 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 XPNPEP2O43895 674 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 CFHR2P36980 270 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 MMP16P51512 607 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 DBPQ10586 325 aaPredicted RBP13.5□□□□□ -0.25
CLN3-264ENST00000637985 DHRS7BQ6IAN0 325 aaPredicted RBP13.5□□□□□ -0.25
CLN3-264ENST00000637985 PGBD2Q6P3X8 592 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 FBXW12Q6X9E4 464 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 Q6ZR03 302 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 SLC26A10Q8NG04 563 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 APOBEC3DQ96AK3 386 aaPredicted RBP13.5□□□□□ -0.25
CLN3-264ENST00000637985 PHF21AQ96BD5 680 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 TBX15Q96SF7 602 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 CDADC1Q9BWV3 514 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 TRIM15Q9C019 465 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 MUC13Q9H3R2 512 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 GCM1Q9NP62 436 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 RPRD1BQ9NQG5 326 aaKnown RBP13.5□□□□□ -0.25
CLN3-264ENST00000637985 KIF17Q9P2E2 1029 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 LYVE1Q9Y5Y7 322 aa13.5□□□□□ -0.25
CLN3-264ENST00000637985 B2RBV5 119 aa13.49□□□□□ -0.25
CLN3-264ENST00000637985 ZNF205O95201 554 aa13.49□□□□□ -0.25
CLN3-264ENST00000637985 MPIG6BO95866 241 aa13.49□□□□□ -0.25
CLN3-264ENST00000637985 DBHP09172 617 aa13.49□□□□□ -0.25
CLN3-264ENST00000637985 MMP9P14780 707 aa13.49□□□□□ -0.25
CLN3-264ENST00000637985 PITPNBP48739 271 aa13.49□□□□□ -0.25
CLN3-264ENST00000637985 MEP1BQ16820 701 aa13.49□□□□□ -0.25
CLN3-264ENST00000637985 CYP2R1Q6VVX0 501 aa13.49□□□□□ -0.25
CLN3-264ENST00000637985 OR8B3Q8NGG8 313 aa13.49□□□□□ -0.25
CLN3-264ENST00000637985 LRTOMTQ8WZ04 291 aa13.49□□□□□ -0.25
CLN3-264ENST00000637985 NSL1Q96IY1 281 aa13.49□□□□□ -0.25
CLN3-264ENST00000637985 OR8B2Q96RD0 313 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms