RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	STAC2	Q6ZMT1	411 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	COLCA1	Q6ZS62	124 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823		Q6ZSR3	168 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	DOK3	Q7L591	496 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	PLPP7	Q8NBV4	271 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	OR1J2	Q8NGS2	313 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	MCFD2	Q8NI22	146 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	TMEM106A	Q96A25	262 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	POM121L2	Q96KW2	1035 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	USB1	Q9BQ65	265 aa	Known RBP	10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	C1QTNF5	Q9BXJ0	243 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	MOV10	Q9HCE1	1003 aa	Known RBP	10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	TCF7L1	Q9HCS4	588 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	GPR84	Q9NQS5	396 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	ZNF275	Q9NSD4	429 aa	Predicted RBP	10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	JKAMP	Q9P055	326 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	ZNF391	Q9UJN7	358 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	PMF1-BGLAP	U3KQ54	211 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	KMT2B	Q9UMN6	2715 aa	Predicted RBP	10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	COL6A6	A6NMZ7	2263 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	ESPL1	Q14674	2120 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823		A0A075B6Q4	140 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	LOC390937	A0A1W2PQ73	354 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	C5orf49	A4QMS7	147 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	OR5H1	A6NKK0	313 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823		H3BSH0	61 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	CCL21	O00585	134 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	ATXN7	O15265	892 aa	Predicted RBP	10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	MTRF1	O75570	445 aa	Known RBP	10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	ZNF14	P17017	642 aa	Predicted RBP	10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	RAB3B	P20337	219 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	PSMD7	P51665	324 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	HGFAC	Q04756	655 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	HNRNPA0	Q13151	305 aa	Known RBP	10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	TIMM23B	Q5SRD1	257 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	LINC00299	Q6ZSB3	139 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	COMMD2	Q86X83	199 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	ZNF584	Q8IVC4	421 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	FAM169B	Q8N8A8	192 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	SLC30A7	Q8NEW0	376 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	STEAP2	Q8NFT2	490 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	ITFG2	Q969R8	447 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	SGK3	Q96BR1	496 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	BARHL1	Q9BZE3	327 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	RGCC	Q9H4X1	137 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	ZCCHC4	Q9H5U6	513 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	CRNN	Q9UBG3	495 aa	Predicted RBP	10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	CKLF	Q9UBR5	152 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	FOXJ3	Q9UPW0	622 aa		10.22	□□□□□ -0.77
CLN6-223	ENST00000637823	EPG5	Q9HCE0	2579 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	USP24	Q9UPU5	2620 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	C5orf63	A6NC05	138 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	EEF1E1-BLOC1S5	C9J1V9	151 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	EEF1E1	O43324	174 aa	Known RBP	10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	XRCC2	O43543	280 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	FST	P19883	344 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	CCNO	P22674	350 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	CFL1	P23528	166 aa	Known RBP	10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	MRPL49	Q13405	166 aa	Known RBP	10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	TBC1D28	Q2M2D7	210 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	SNAI3	Q3KNW1	292 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	CEP78	Q5JTW2	689 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	NCCRP1	Q6ZVX7	275 aa	Predicted RBP	10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	LRRTM1	Q86UE6	522 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	LIX1L	Q8IVB5	337 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	SERPINA12	Q8IW75	414 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	PARP16	Q8N5Y8	322 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	RELL2	Q8NC24	303 aa	Predicted RBP	10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	OR5D14	Q8NGL3	314 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	AKAP1	Q92667	903 aa	Known RBP eCLIP	10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	APOBEC3D	Q96AK3	386 aa	Predicted RBP	10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	FGGY	Q96C11	551 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	ORAI1	Q96D31	301 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	FAM71F1	Q96KD3	344 aa	Predicted RBP	10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	LYZL4	Q96KX0	146 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	PLEKHB1	Q9UF11	243 aa	Predicted RBP	10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	SLC25A15	Q9Y619	301 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823		V9GYS6	101 aa		10.21	□□□□□ -0.77
CLN6-223	ENST00000637823	PRR14L	Q5THK1	2151 aa		10.21	□□□□□ -0.78
CLN6-223	ENST00000637823	TRAV8-7	A0A075B6U6	113 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823		A0A1W2PR80	420 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	MEGF11	A6BM72	1044 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	ANKRD61	A6NGH8	418 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	DHRS7C	A6NNS2	312 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	NOTO	A8MTQ0	251 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	LMX1B	O60663	402 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	TMEM127	O75204	238 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	DHRS3	O75911	302 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	NCR1	O76036	304 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	AGFG2	O95081	481 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	IGKV3-15	P01624	115 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	CCL2	P13500	99 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	ZNF20	P17024	532 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	IGFBP3	P17936	291 aa	Predicted RBP	10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	ANOS1	P23352	680 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	DDOST	P39656	456 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	MAP2K3	P46734	347 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	IDH3G	P51553	393 aa	Predicted RBP	10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	CAV3	P56539	151 aa		10.2	□□□□□ -0.78
CLN6-223	ENST00000637823	GFOD2	Q3B7J2	385 aa		10.2	□□□□□ -0.78

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