RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 IGHV4-39P01824 125 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 BMP4P12644 408 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 CPEP16870 476 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 GALP22466 123 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 PSMA1P25786 263 aaKnown RBP8.48□□□□□ -1.05
CLN3-261ENST00000637686 OTX1P32242 354 aaPredicted RBP8.48□□□□□ -1.05
CLN3-261ENST00000637686 GLRXP35754 106 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 OPRL1P41146 370 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 MAP2K4P45985 399 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 GDI2P50395 445 aaKnown RBP8.48□□□□□ -1.05
CLN3-261ENST00000637686 RIDAP52758 137 aaKnown RBP8.48□□□□□ -1.05
CLN3-261ENST00000637686 GBX2P52951 348 aaPredicted RBP8.48□□□□□ -1.05
CLN3-261ENST00000637686 UCP2P55851 309 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 SNRPD2P62316 118 aaKnown RBP8.48□□□□□ -1.05
CLN3-261ENST00000637686 GRB2P62993 217 aaKnown RBP8.48□□□□□ -1.05
CLN3-261ENST00000637686 EIF2B1Q14232 305 aaKnown RBP8.48□□□□□ -1.05
CLN3-261ENST00000637686 RAB35Q15286 201 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 MED22Q15528 200 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 TRAM1Q15629 374 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 EFNB3Q15768 340 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 NEDD8Q15843 81 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 RPL22L1Q6P5R6 122 aaKnown RBP8.48□□□□□ -1.05
CLN3-261ENST00000637686 CORO6Q6QEF8 472 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 PRSS57Q6UWY2 283 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 VASH1Q7L8A9 365 aaPredicted RBP8.48□□□□□ -1.05
CLN3-261ENST00000637686 DCXRQ7Z4W1 244 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 GPR141Q7Z602 305 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 THEM6Q8WUY1 208 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 MAP6Q96JE9 813 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 Q96MF0 132 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 COQ7Q99807 217 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 PLK3Q9H4B4 646 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 MOB1AQ9H8S9 216 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 PNRC2Q9NPJ4 139 aaKnown RBP8.48□□□□□ -1.05
CLN3-261ENST00000637686 PLEK2Q9NYT0 353 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 ASH2LQ9UBL3 628 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 EIF3KQ9UBQ5 218 aaKnown RBP8.48□□□□□ -1.05
CLN3-261ENST00000637686 MRM2Q9UI43 246 aaKnown RBP8.48□□□□□ -1.05
CLN3-261ENST00000637686 FZR1Q9UM11 496 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 KLHDC2Q9Y2U9 406 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 PMF1-BGLAPU3KQ54 211 aa8.48□□□□□ -1.05
CLN3-261ENST00000637686 VPS13CQ709C8 3753 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 H7C417 338 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 CCRL2O00421 344 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 RER1O15258 196 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 OGG1O15527 345 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 SGCEO43556 437 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 PLPP2O43688 288 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 DOK2O60496 412 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 INMTO95050 263 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 LCKP06239 509 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 PSKH1P11801 424 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 PCSK6P29122 969 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 RAD52P43351 418 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 MMP16P51512 607 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 CCR9P51686 369 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 GP2P55259 537 aaKnown RBP8.47□□□□□ -1.05
CLN3-261ENST00000637686 OR12D2P58182 307 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 ERVS71-1P61550 626 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 RPS23P62266 143 aaKnown RBP8.47□□□□□ -1.05
CLN3-261ENST00000637686 ZNF829Q3KNS6 432 aaPredicted RBP8.47□□□□□ -1.05
CLN3-261ENST00000637686 KRTAP27-1Q3LI81 207 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 TIMM50Q3ZCQ8 353 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 CCDC92Q53HC0 331 aaPredicted RBP8.47□□□□□ -1.05
CLN3-261ENST00000637686 ELFN2Q5R3F8 820 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 OR2G6Q5TZ20 316 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 LIPNQ5VXI9 398 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 RGS7BPQ6MZT1 257 aaPredicted RBP8.47□□□□□ -1.05
CLN3-261ENST00000637686 GDPGP1Q6ZNW5 385 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 SSX6Q7RTT6 188 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 KRT77Q7Z794 578 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 LRP11Q86VZ4 500 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 ZNF420Q8TAQ5 688 aaPredicted RBP8.47□□□□□ -1.05
CLN3-261ENST00000637686 SPRYD4Q8WW59 207 aaPredicted RBP8.47□□□□□ -1.05
CLN3-261ENST00000637686 UFD1Q92890 307 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 MRPL24Q96A35 216 aaKnown RBP8.47□□□□□ -1.05
CLN3-261ENST00000637686 SLAMF6Q96DU3 332 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 PELI1Q96FA3 418 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 C4orf36Q96KX1 117 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 OPALINQ96PE5 141 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 OR5M11Q96RB7 305 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 DCLRE1CQ96SD1 692 aaKnown RBP8.47□□□□□ -1.05
CLN3-261ENST00000637686 TBX5Q99593 518 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 DOK1Q99704 481 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 KCNJ15Q99712 375 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 SYT3Q9BQG1 590 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 MRPL37Q9BZE1 423 aaKnown RBP8.47□□□□□ -1.05
CLN3-261ENST00000637686 FAM192AQ9GZU8 254 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 SP140LQ9H930 580 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 NDUFB11Q9NX14 153 aa8.47□□□□□ -1.05
CLN3-261ENST00000637686 CELSR1Q9NYQ6 3014 aa8.46□□□□□ -1.05
CLN3-261ENST00000637686 OR6C6A6NF89 314 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 PRR32B1ATL7 298 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 J3QLW9 94 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 J3QW42 95 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 SYNGR3O43761 229 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 H2BFMP0C1H6 154 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 CD99P14209 185 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 ZNF19P17023 458 aa8.46□□□□□ -1.06
CLN3-261ENST00000637686 PSMB9P28065 219 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms