RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SBK2P0C263 348 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 ANPEPP15144 967 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 USF1P22415 310 aaPredicted RBP15.55■□□□□ 0.08
CLN3-259ENST00000637551 POLR2IP36954 125 aaKnown RBP15.55■□□□□ 0.08
CLN3-259ENST00000637551 CX3CR1P49238 355 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 EGR3Q06889 387 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 TMEM255AQ5JRV8 349 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 MRPL21Q7Z2W9 205 aaKnown RBP15.55■□□□□ 0.08
CLN3-259ENST00000637551 ZNF679Q8IYX0 411 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 ZNF283Q8N7M2 679 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 FAM81AQ8TBF8 368 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 SLC30A2Q9BRI3 323 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 TPK1Q9H3S4 243 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 MOB1AQ9H8S9 216 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 ADGRL4Q9HBW9 690 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 SMPD3Q9NY59 655 aaPredicted RBP15.55■□□□□ 0.08
CLN3-259ENST00000637551 MRPL15Q9P015 296 aaKnown RBP15.55■□□□□ 0.08
CLN3-259ENST00000637551 IGHV1-69-2A0A0G2JMI3 117 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 NCR1O76036 304 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 FSTL3O95633 263 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 BAG2O95816 211 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 HEXAP06865 529 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 OR2T7P0C7T2 308 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 NAA10P41227 235 aaPredicted RBP15.54■□□□□ 0.08
CLN3-259ENST00000637551 MMP16P51512 607 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 RCN1Q15293 331 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 ZCCHC24Q8N2G6 241 aaKnown RBP15.54■□□□□ 0.08
CLN3-259ENST00000637551 FTMTQ8N4E7 242 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 PLPP7Q8NBV4 271 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 OR2T27Q8NH04 317 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 THEM6Q8WUY1 208 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 ERGIC1Q969X5 290 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 Q96MT0 163 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 OR10A2Q9H208 303 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 POFUT1Q9H488 388 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 PTTG3PQ9NZH4 202 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 PCDHGB1Q9Y5G3 927 aa15.54■□□□□ 0.08
CLN3-259ENST00000637551 FN1P02751 2386 aaKnown RBP15.54■□□□□ 0.08
CLN3-259ENST00000637551 A0A0U1RQV5 110 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 RNF223E7ERA6 249 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 HPXP02790 462 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 ATP6V1B1P15313 513 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 GATA4P43694 442 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 CCL8P80075 99 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 MZT1Q08AG7 82 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 ZNF829Q3KNS6 432 aaPredicted RBP15.53■□□□□ 0.08
CLN3-259ENST00000637551 KRT74Q7RTS7 529 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 KRT77Q7Z794 578 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 SPERTQ8NA61 448 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 OR8B4Q96RC9 309 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 MBOAT4Q96T53 435 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 AMELYQ99218 206 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 SLC29A1Q99808 456 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 ABCB9Q9NP78 766 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 GMPPBQ9Y5P6 360 aa15.53■□□□□ 0.08
CLN3-259ENST00000637551 COL6A5A8TX70 2615 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 LOC100130705A0A1B0GUX0 176 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 ZNF670-ZNF695F2Z2N8 137 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 GMDSO60547 372 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 SULT1C4O75897 302 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 LY6HO94772 140 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 CPT2P23786 658 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 MAGEB1P43366 347 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 SRP9P49458 86 aaKnown RBP15.52■□□□□ 0.08
CLN3-259ENST00000637551 PRKXP51817 358 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 CHN2P52757 468 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 ZNF121P58317 390 aaPredicted RBP15.52■□□□□ 0.08
CLN3-259ENST00000637551 ACTC1P68032 377 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 ACTA1P68133 377 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 IL18R1Q13478 541 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 HLXQ14774 488 aaPredicted RBP15.52■□□□□ 0.08
CLN3-259ENST00000637551 ZNF181Q2M3W8 571 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 HFEQ30201 348 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 SNAI3Q3KNW1 292 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 SLC35F2Q8IXU6 374 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 CIARTQ8N365 385 aaPredicted RBP15.52■□□□□ 0.08
CLN3-259ENST00000637551 SPATA3Q8NHX4 192 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 APOL4Q9BPW4 351 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 BPESC1Q9GZL8 116 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 VCXQ9H320 206 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 FAM118AQ9NWS6 357 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 LRP12Q9Y561 859 aa15.52■□□□□ 0.08
CLN3-259ENST00000637551 CD300LBA8K4G0 201 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 PTBP3O95758 552 aaKnown RBP15.51■□□□□ 0.07
CLN3-259ENST00000637551 ANXA2P07355 339 aaKnown RBP15.51■□□□□ 0.07
CLN3-259ENST00000637551 GABRB1P18505 474 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 MTNR1AP48039 350 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 RIDAP52758 137 aaKnown RBP15.51■□□□□ 0.07
CLN3-259ENST00000637551 TNFAIP6P98066 277 aaPredicted RBP15.51■□□□□ 0.07
CLN3-259ENST00000637551 ZNF92Q03936 586 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 OR8B8Q15620 311 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 TRIP10Q15642 601 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 GLYATL3Q5SZD4 288 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 TTC23Q5W5X9 447 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 OR2T2Q6IF00 324 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 ZNF322Q6U7Q0 402 aaPredicted RBP15.51■□□□□ 0.07
CLN3-259ENST00000637551 Q6ZR03 302 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 USP51Q70EK9 711 aa15.51■□□□□ 0.07
CLN3-259ENST00000637551 Q71RC1 249 aaPredicted RBP15.51■□□□□ 0.07
CLN3-259ENST00000637551 PRIMA1Q86XR5 153 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms