RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 SFXN4Q6P4A7 337 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 ZNF474Q6S9Z5 364 aaPredicted RBP16.02■□□□□ 0.15
CLN3-254ENST00000637050 COLCA1Q6ZS62 124 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 DOK3Q7L591 496 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 C17orf78Q8N4C9 275 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 AP3S1Q92572 193 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 POM121L2Q96KW2 1035 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 GFI1Q99684 422 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 SMURF1Q9HCE7 757 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 ZNF629Q9UEG4 869 aaPredicted RBP16.02■□□□□ 0.15
CLN3-254ENST00000637050 SH3BGRL2Q9UJC5 107 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 FOXJ3Q9UPW0 622 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 NOTOA8MTQ0 251 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 MSTNO14793 375 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 LCATP04180 440 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 IGFBP3P17936 291 aaPredicted RBP16.01■□□□□ 0.15
CLN3-254ENST00000637050 ADRA2CP18825 462 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 COMMD2Q86X83 199 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 PARP16Q8N5Y8 322 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 WDR31Q8NA23 367 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 OR1J2Q8NGS2 313 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 DMRTA2Q96SC8 542 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 VKORC1Q9BQB6 163 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 SLC30A2Q9BRI3 323 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 SOX7Q9BT81 388 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 C1QTNF5Q9BXJ0 243 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 PIGMQ9H3S5 423 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 AK6Q9Y3D8 172 aaKnown RBP16.01■□□□□ 0.15
CLN3-254ENST00000637050 PEX16Q9Y5Y5 336 aa16.01■□□□□ 0.15
CLN3-254ENST00000637050 INTS1Q8N201 2190 aaKnown RBP16.01■□□□□ 0.15
CLN3-254ENST00000637050 CTDSP2O14595 271 aa16■□□□□ 0.15
CLN3-254ENST00000637050 SERPINA5P05154 406 aa16■□□□□ 0.15
CLN3-254ENST00000637050 ZNF12P17014 697 aa16■□□□□ 0.15
CLN3-254ENST00000637050 SLC25A35Q3KQZ1 300 aa16■□□□□ 0.15
CLN3-254ENST00000637050 SGK3Q96BR1 496 aa16■□□□□ 0.15
CLN3-254ENST00000637050 FGGYQ96C11 551 aa16■□□□□ 0.15
CLN3-254ENST00000637050 FAM71F1Q96KD3 344 aaPredicted RBP16■□□□□ 0.15
CLN3-254ENST00000637050 ZGRF1Q86YA3 2104 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 C5orf49A4QMS7 147 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 A8MXE2 369 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 EPXP11678 715 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 THBS2P35442 1172 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 GFOD2Q3B7J2 385 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 NCCRP1Q6ZVX7 275 aaPredicted RBP15.99■□□□□ 0.15
CLN3-254ENST00000637050 BHLHA15Q7RTS1 189 aaPredicted RBP15.99■□□□□ 0.15
CLN3-254ENST00000637050 CCDC54Q8NEL0 328 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 OR14K1Q8NGZ2 314 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 KCTD12Q96CX2 325 aaKnown RBP15.99■□□□□ 0.15
CLN3-254ENST00000637050 ADAT3Q96EY9 351 aaPredicted RBP15.99■□□□□ 0.15
CLN3-254ENST00000637050 OBP2BQ9NPH6 170 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 AKIP1Q9NQ31 210 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 TAS2R4Q9NYW5 299 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 CKLFQ9UBR5 152 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 ZNF14P17017 642 aaPredicted RBP15.99■□□□□ 0.15
CLN3-254ENST00000637050 BMP5P22003 454 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 HOXC12P31275 282 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 S100A5P33763 92 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 APLNRP35414 380 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 CASP6P55212 293 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 IDNKQ5T6J7 187 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 TMEM211Q6ICI0 200 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 SERPINA12Q8IW75 414 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 ACOT12Q8WYK0 555 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 MS4A3Q96HJ5 214 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 RGCCQ9H4X1 137 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 ZNF391Q9UJN7 358 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 MEMO1Q9Y316 297 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 V9GY05 133 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 V9GYS6 101 aa15.99■□□□□ 0.15
CLN3-254ENST00000637050 LOC390937A0A1W2PQ73 354 aa15.98■□□□□ 0.15
CLN3-254ENST00000637050 A0A1W2PR80 420 aa15.98■□□□□ 0.15
CLN3-254ENST00000637050 DHRS3O75911 302 aa15.98■□□□□ 0.15
CLN3-254ENST00000637050 MAS1P04201 325 aa15.98■□□□□ 0.15
CLN3-254ENST00000637050 CCL2P13500 99 aa15.98■□□□□ 0.15
CLN3-254ENST00000637050 CBR1P16152 277 aa15.98■□□□□ 0.15
CLN3-254ENST00000637050 CA7P43166 264 aa15.98■□□□□ 0.15
CLN3-254ENST00000637050 GLYATL3Q5SZD4 288 aa15.98■□□□□ 0.15
CLN3-254ENST00000637050 MRGPRGQ86SM5 289 aa15.98■□□□□ 0.15
CLN3-254ENST00000637050 S100ZQ8WXG8 99 aa15.98■□□□□ 0.15
CLN3-254ENST00000637050 REEP6Q96HR9 211 aa15.98■□□□□ 0.15
CLN3-254ENST00000637050 DAPK2Q9UIK4 370 aa15.98■□□□□ 0.15
CLN3-254ENST00000637050 TRGV8A0A0C4DH27 118 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 OR5H1A6NKK0 313 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 IFITM5A6NNB3 132 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 TMEM127O75204 238 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 MTRF1O75570 445 aaKnown RBP15.97■□□□□ 0.15
CLN3-254ENST00000637050 SLC2A2P11168 524 aaPredicted RBP15.97■□□□□ 0.15
CLN3-254ENST00000637050 BMP4P12644 408 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 ATF1P18846 271 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 PSMB1P20618 241 aaKnown RBP15.97■□□□□ 0.15
CLN3-254ENST00000637050 CCNOP22674 350 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 DDOSTP39656 456 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 PSMD7P51665 324 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 ZNF529Q6P280 563 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 MZT2AQ6P582 158 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 SLC30A7Q8NEW0 376 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 OR2AE1Q8NHA4 323 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 RND1Q92730 232 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 SPSB4Q96A44 273 aa15.97■□□□□ 0.15
CLN3-254ENST00000637050 CMAHPQ9Y471 501 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms