RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 WDR89Q96FK6 387 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-214ENST00000637038 CXorf58Q96LI9 332 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 TSSK2Q96PF2 358 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 NCOR1P1Q9H4R4 102 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 CDCP1Q9H5V8 836 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 BIN3Q9NQY0 253 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 SLC2A8Q9NY64 477 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 TAS2R4Q9NYW5 299 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 VSX1Q9NZR4 365 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-214ENST00000637038 WASF3Q9UPY6 502 aa3.57□□□□□ -1.84
SCN1A-214ENST00000637038 CHTOPQ9Y3Y2 248 aaKnown RBP3.57□□□□□ -1.84
SCN1A-214ENST00000637038 PCNX3Q9H6A9 2034 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 IGKV1D-42A0A075B6H8 117 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 C13orf42A0A1B0GVH6 325 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 SLC22A23A1A5C7 686 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 MEIS3P1A6NDR6 274 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 MPTX1A8MV57 137 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ALG1L2C9J202 215 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 M0QYG6 137 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 TAAR5O14804 337 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 HPP00738 406 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 PLATP00750 562 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 APOC1P02654 83 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 BGLAPP02818 100 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 CD74P04233 296 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 GSTP1P09211 210 aaKnown RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 CD1CP29017 333 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 KIR3DL2P43630 455 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 AKR1D1P51857 326 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 SPOCK1Q08629 439 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 DHRS2Q13268 280 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ARFRP1Q13795 201 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ATXN7L3Q14CW9 347 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 LRRC37A5PQ49AS3 106 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF660Q6AZW8 331 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 TFAP2EQ6VUC0 442 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 IL34Q6ZMJ4 242 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 BEND4Q6ZU67 534 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 SLC35D2Q76EJ3 337 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 SLC25A42Q86VD7 318 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 CATSPERDQ86XM0 798 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 GALNT16Q8N428 558 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 PLPP7Q8NBV4 271 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 OR4K17Q8NGC6 315 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 OR5H2Q8NGV7 314 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 KCNG3Q8TAE7 436 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ZPLD1Q8TCW7 415 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 DVL3Q92997 716 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 SEH1LQ96EE3 360 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 KTI12Q96EK9 354 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 MRGPRX1Q96LB2 322 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 GFI1Q99684 422 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 GAL3ST1Q99999 423 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 NUDT9Q9BW91 350 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ULBP3Q9BZM4 244 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 CST11Q9H112 138 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 CHMP1AQ9HD42 196 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 CUTCQ9NTM9 273 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 HPF1Q9NWY4 346 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 KCNMB2Q9Y691 235 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 VSTM2BA6NLU5 285 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 EEF1E1-BLOC1S5C9J1V9 151 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 F8W036 122 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 H0Y8X5 98 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 PLGP00747 810 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 IGHMP01871 453 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 AMY2BP19961 511 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 MPZP25189 248 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 PSMB6P28072 239 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 MPGP29372 298 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 RBMXP38159 391 aaKnown RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF41P51814 821 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 NR0B1P51843 470 aaKnown RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 GUCA2AQ02747 115 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ERV3-1Q14264 604 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 NKPD1Q17RQ9 610 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 PNLIPRP3Q17RR3 467 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 TUSC1Q2TAM9 212 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 C1orf100Q5SVJ3 147 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 SFRP5Q5T4F7 317 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ATPAF1Q5TC12 328 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 MDGA2Q7Z553 956 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 FJX1Q86VR8 437 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 KDM8Q8N371 416 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ARHGEF39Q8N4T4 335 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ARRDC1Q8N5I2 433 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF615Q8N8J6 731 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 CCDC54Q8NEL0 328 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 OR56B1Q8NGI3 324 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 OR1J2Q8NGS2 313 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 TMEM158Q8WZ71 300 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 TAAR8Q969N4 342 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 TMEM41AQ96HV5 264 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ABHD6Q9BV23 337 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ADAM19Q9H013 955 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 SLC6A17Q9H1V8 727 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 METTL8Q9H825 291 aaKnown RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 TNFSF18Q9UNG2 199 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 KLHDC2Q9Y2U9 406 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 EMC9Q9Y3B6 208 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms