RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SSX4O60224 188 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 OR2T7P0C7T2 308 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 RIDAP52758 137 aaKnown RBP15.45■□□□□ 0.06
CLN3-239ENST00000628023 EFNA4P52798 201 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 PSMA6P60900 246 aaKnown RBP15.45■□□□□ 0.06
CLN3-239ENST00000628023 ZNF91Q05481 1191 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 PSG7Q13046 419 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 RIPK1Q13546 671 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 GFOD2Q3B7J2 385 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 FBXW12Q6X9E4 464 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 PGAP1Q75T13 922 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 ZNF679Q8IYX0 411 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 OR5AS1Q8N127 324 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 RFLNBQ8N5W9 214 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 OR2T27Q8NH04 317 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 PGAM5Q96HS1 289 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 OR8B4Q96RC9 309 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 OR10A2Q9H208 303 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 CYSLTR2Q9NS75 346 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 ZANQ9Y493 2812 aa15.45■□□□□ 0.06
CLN3-239ENST00000628023 INAFM1C9JVW0 142 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 RRP9O43818 475 aaKnown RBP15.44■□□□□ 0.06
CLN3-239ENST00000628023 ZNF254O75437 659 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 KRT8P05787 483 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 DBTP11182 482 aaKnown RBP15.44■□□□□ 0.06
CLN3-239ENST00000628023 SELEP16581 610 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 LIPAP38571 399 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 ZNF81P51508 661 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 AQP4P55087 323 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 ACTC1P68032 377 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 ACTA1P68133 377 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 ADARB1P78563 741 aaKnown RBP15.44■□□□□ 0.06
CLN3-239ENST00000628023 EGR3Q06889 387 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 TNK1Q13470 666 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 GK2Q14410 553 aaPredicted RBP15.44■□□□□ 0.06
CLN3-239ENST00000628023 TIGD6Q17RP2 521 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 CLEC12BQ2HXU8 276 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 ZNF829Q3KNS6 432 aaPredicted RBP15.44■□□□□ 0.06
CLN3-239ENST00000628023 GLYATL3Q5SZD4 288 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 OR2T2Q6IF00 324 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 DEGS2Q6QHC5 323 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 USP51Q70EK9 711 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 C8orf59Q8N0T1 100 aaPredicted RBP15.44■□□□□ 0.06
CLN3-239ENST00000628023 OR2AE1Q8NHA4 323 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 APH1BQ8WW43 257 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 NEU4Q8WWR8 484 aaPredicted RBP15.44■□□□□ 0.06
CLN3-239ENST00000628023 GTF3AQ92664 365 aaKnown RBP15.44■□□□□ 0.06
CLN3-239ENST00000628023 HAVCR1Q96D42 359 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 GTF2A1LQ9UNN4 478 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 RPL36Q9Y3U8 105 aaKnown RBP15.44■□□□□ 0.06
CLN3-239ENST00000628023 PCDHGB1Q9Y5G3 927 aa15.44■□□□□ 0.06
CLN3-239ENST00000628023 A0A1W2PQL4 384 aaPredicted RBP15.43■□□□□ 0.06
CLN3-239ENST00000628023 C17orf100A8MU93 164 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 PRR32B1ATL7 298 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 TPD52L2O43399 206 aaKnown RBP15.43■□□□□ 0.06
CLN3-239ENST00000628023 XRCC2O43543 280 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 SPRY3O43610 288 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 LY6HO94772 140 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 F12P00748 615 aaPredicted RBP15.43■□□□□ 0.06
CLN3-239ENST00000628023 KITLGP21583 273 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 PRSS12P56730 875 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 ROM1Q03395 351 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 CARTPTQ16568 116 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 PCGF3Q3KNV8 242 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 TMEM255AQ5JRV8 349 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 CLEC2AQ6UVW9 174 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 FAM220AQ7Z4H9 259 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 OR52H1Q8NGJ2 320 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 CNIH3Q8TBE1 160 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 SPRYD4Q8WW59 207 aaPredicted RBP15.43■□□□□ 0.06
CLN3-239ENST00000628023 OPA3Q9H6K4 179 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 MSL2Q9HCI7 577 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 AMBNQ9NP70 447 aa15.43■□□□□ 0.06
CLN3-239ENST00000628023 TMEM269A0A1B0GVZ9 245 aa15.42■□□□□ 0.06
CLN3-239ENST00000628023 GGT3PA6NGU5 568 aa15.42■□□□□ 0.06
CLN3-239ENST00000628023 GNAO1P09471 354 aa15.42■□□□□ 0.06
CLN3-239ENST00000628023 MMP15P51511 669 aa15.42■□□□□ 0.06
CLN3-239ENST00000628023 ZNF92Q03936 586 aa15.42■□□□□ 0.06
CLN3-239ENST00000628023 TSTQ16762 297 aaKnown RBP15.42■□□□□ 0.06
CLN3-239ENST00000628023 C6orf52Q5T4I8 152 aa15.42■□□□□ 0.06
CLN3-239ENST00000628023 SSX6Q7RTT6 188 aa15.42■□□□□ 0.06
CLN3-239ENST00000628023 ZNF525Q8N782 197 aa15.42■□□□□ 0.06
CLN3-239ENST00000628023 YIPF7Q8N8F6 280 aa15.42■□□□□ 0.06
CLN3-239ENST00000628023 BHLHE23Q8NDY6 225 aa15.42■□□□□ 0.06
CLN3-239ENST00000628023 LGALS12Q96DT0 336 aa15.42■□□□□ 0.06
CLN3-239ENST00000628023 REEP6Q96HR9 211 aa15.42■□□□□ 0.06
CLN3-239ENST00000628023 DECR2Q9NUI1 292 aa15.42■□□□□ 0.06
CLN3-239ENST00000628023 HSPE1-MOB4S4R3N1 261 aa15.42■□□□□ 0.06
CLN3-239ENST00000628023 DAPL1A0PJW8 107 aa15.41■□□□□ 0.06
CLN3-239ENST00000628023 C5orf63A6NC05 138 aa15.41■□□□□ 0.06
CLN3-239ENST00000628023 ZSCAN5BA6NJL1 495 aa15.41■□□□□ 0.06
CLN3-239ENST00000628023 H0YJX3 145 aa15.41■□□□□ 0.06
CLN3-239ENST00000628023 MAGEB4O15481 346 aaPredicted RBP15.41■□□□□ 0.06
CLN3-239ENST00000628023 RPP14O95059 124 aaKnown RBP15.41■□□□□ 0.06
CLN3-239ENST00000628023 FADS2O95864 444 aaKnown RBP15.41■□□□□ 0.06
CLN3-239ENST00000628023 CSF3P09919 207 aa15.41■□□□□ 0.06
CLN3-239ENST00000628023 DAOP14920 347 aa15.41■□□□□ 0.06
CLN3-239ENST00000628023 ANOS1P23352 680 aa15.41■□□□□ 0.06
CLN3-239ENST00000628023 CFL1P23528 166 aaKnown RBP15.41■□□□□ 0.06
CLN3-239ENST00000628023 MAGEB1P43366 347 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms