RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 KCNJ8Q15842 424 aa20.69■□□□□ 0.9
PTPRF-216ENST00000617451 MIDNQ504T8 468 aa20.69■□□□□ 0.9
PTPRF-216ENST00000617451 CD276Q5ZPR3 534 aa20.69■□□□□ 0.9
PTPRF-216ENST00000617451 RUSC1-AS1Q66K80 236 aa20.69■□□□□ 0.9
PTPRF-216ENST00000617451 GLYATQ6IB77 296 aa20.69■□□□□ 0.9
PTPRF-216ENST00000617451 TMEM86BQ8N661 226 aa20.69■□□□□ 0.9
PTPRF-216ENST00000617451 TECTBQ96PL2 329 aa20.69■□□□□ 0.9
PTPRF-216ENST00000617451 CHIAQ9BZP6 476 aa20.69■□□□□ 0.9
PTPRF-216ENST00000617451 SLC22A4Q9H015 551 aa20.69■□□□□ 0.9
PTPRF-216ENST00000617451 CCDC134Q9H6E4 229 aa20.69■□□□□ 0.9
PTPRF-216ENST00000617451 FN3KRPQ9HA64 309 aa20.69■□□□□ 0.9
PTPRF-216ENST00000617451 C1RLQ9NZP8 487 aa20.69■□□□□ 0.9
PTPRF-216ENST00000617451 SAMD4AQ9UPU9 718 aaKnown RBP20.69■□□□□ 0.9
PTPRF-216ENST00000617451 NOP16Q9Y3C1 178 aaKnown RBP20.69■□□□□ 0.9
PTPRF-216ENST00000617451 OR6C68A6NDL8 312 aa20.68■□□□□ 0.9
PTPRF-216ENST00000617451 ZNF879B4DU55 563 aa20.68■□□□□ 0.9
PTPRF-216ENST00000617451 P2RY10O00398 339 aa20.68■□□□□ 0.9
PTPRF-216ENST00000617451 TNFRSF13BO14836 293 aaPredicted RBP20.68■□□□□ 0.9
PTPRF-216ENST00000617451 NDUFA7O95182 113 aa20.68■□□□□ 0.9
PTPRF-216ENST00000617451 LIPFP07098 398 aa20.68■□□□□ 0.9
PTPRF-216ENST00000617451 MMP9P14780 707 aa20.68■□□□□ 0.9
PTPRF-216ENST00000617451 TPTEP56180 551 aa20.68■□□□□ 0.9
PTPRF-216ENST00000617451 SFRP4Q6FHJ7 346 aaPredicted RBP20.68■□□□□ 0.9
PTPRF-216ENST00000617451 C17orf107Q6ZR85 190 aa20.68■□□□□ 0.9
PTPRF-216ENST00000617451 MRPL21Q7Z2W9 205 aaKnown RBP20.68■□□□□ 0.9
PTPRF-216ENST00000617451 MAP6Q96JE9 813 aa20.68■□□□□ 0.9
PTPRF-216ENST00000617451 FAM71F1Q96KD3 344 aaPredicted RBP20.68■□□□□ 0.9
PTPRF-216ENST00000617451 TBX15Q96SF7 602 aa20.68■□□□□ 0.9
PTPRF-216ENST00000617451 IFT27Q9BW83 186 aa20.68■□□□□ 0.9
PTPRF-216ENST00000617451 MMADHCQ9H3L0 296 aaPredicted RBP20.68■□□□□ 0.9
PTPRF-216ENST00000617451 MRPL22Q9NWU5 206 aaKnown RBP20.68■□□□□ 0.9
PTPRF-216ENST00000617451 PDP1Q9P0J1 537 aaPredicted RBP20.68■□□□□ 0.9
PTPRF-216ENST00000617451 KIF17Q9P2E2 1029 aa20.68■□□□□ 0.9
PTPRF-216ENST00000617451 ERVK-18Q9QC07 812 aa20.68■□□□□ 0.9
PTPRF-216ENST00000617451 CD300LBA8K4G0 201 aa20.67■□□□□ 0.9
PTPRF-216ENST00000617451 LGALS8O00214 317 aa20.67■□□□□ 0.9
PTPRF-216ENST00000617451 HLA-DQA2P01906 255 aa20.67■□□□□ 0.9
PTPRF-216ENST00000617451 MELTFP08582 738 aa20.67■□□□□ 0.9
PTPRF-216ENST00000617451 SMIM11AP58511 58 aa20.67■□□□□ 0.9
PTPRF-216ENST00000617451 PSME3P61289 254 aa20.67■□□□□ 0.9
PTPRF-216ENST00000617451 OLFML2AQ68BL7 652 aa20.67■□□□□ 0.9
PTPRF-216ENST00000617451 PLPP7Q8NBV4 271 aa20.67■□□□□ 0.9
PTPRF-216ENST00000617451 FN3KQ9H479 309 aa20.67■□□□□ 0.9
PTPRF-216ENST00000617451 POMT1Q9Y6A1 747 aa20.67■□□□□ 0.9
PTPRF-216ENST00000617451 CENPVL3A0A0U1RRI6 287 aa20.66■□□□□ 0.9
PTPRF-216ENST00000617451 M0R135 149 aa20.66■□□□□ 0.9
PTPRF-216ENST00000617451 IDH3BO43837 385 aa20.66■□□□□ 0.9
PTPRF-216ENST00000617451 GMDSO60547 372 aa20.66■□□□□ 0.9
PTPRF-216ENST00000617451 TOX4O94842 621 aa20.66■□□□□ 0.9
PTPRF-216ENST00000617451 NOS3P29474 1203 aa20.66■□□□□ 0.9
PTPRF-216ENST00000617451 ZNF92Q03936 586 aa20.66■□□□□ 0.9
PTPRF-216ENST00000617451 SDR9C7Q8NEX9 313 aa20.66■□□□□ 0.9
PTPRF-216ENST00000617451 SPTSSAQ969W0 71 aa20.66■□□□□ 0.9
PTPRF-216ENST00000617451 ZNF799Q96GE5 643 aa20.66■□□□□ 0.9
PTPRF-216ENST00000617451 WDFY2Q96P53 400 aa20.66■□□□□ 0.9
PTPRF-216ENST00000617451 CITED1Q99966 193 aa20.66■□□□□ 0.9
PTPRF-216ENST00000617451 ADAT1Q9BUB4 502 aaKnown RBP20.66■□□□□ 0.9
PTPRF-216ENST00000617451 KCNG2Q9UJ96 466 aa20.66■□□□□ 0.9
PTPRF-216ENST00000617451 C3orf80F5H4A9 247 aa20.65■□□□□ 0.9
PTPRF-216ENST00000617451 ADAM20O43506 726 aa20.65■□□□□ 0.9
PTPRF-216ENST00000617451 GADD45GO95257 159 aa20.65■□□□□ 0.9
PTPRF-216ENST00000617451 SNAI3Q3KNW1 292 aa20.65■□□□□ 0.9
PTPRF-216ENST00000617451 BOLLQ8N9W6 283 aaKnown RBP20.65■□□□□ 0.9
PTPRF-216ENST00000617451 GATAD2BQ8WXI9 593 aa20.65■□□□□ 0.9
PTPRF-216ENST00000617451 SMURF1Q9HCE7 757 aa20.65■□□□□ 0.9
PTPRF-216ENST00000617451 TRIM36Q9NQ86 728 aa20.65■□□□□ 0.9
PTPRF-216ENST00000617451 CLPSL1A2RUU4 121 aa20.64■□□□□ 0.89
PTPRF-216ENST00000617451 NDUFA2O43678 99 aa20.64■□□□□ 0.89
PTPRF-216ENST00000617451 SEMG1P04279 462 aa20.64■□□□□ 0.89
PTPRF-216ENST00000617451 ANOS1P23352 680 aa20.64■□□□□ 0.89
PTPRF-216ENST00000617451 OTX1P32242 354 aaPredicted RBP20.64■□□□□ 0.89
PTPRF-216ENST00000617451 SPIBQ01892 262 aa20.64■□□□□ 0.89
PTPRF-216ENST00000617451 OR8B8Q15620 311 aa20.64■□□□□ 0.89
PTPRF-216ENST00000617451 ZNF620Q6ZNG0 422 aa20.64■□□□□ 0.89
PTPRF-216ENST00000617451 PNLDC1Q8NA58 520 aaKnown RBP20.64■□□□□ 0.89
PTPRF-216ENST00000617451 SSMEM1Q8WWF3 244 aa20.64■□□□□ 0.89
PTPRF-216ENST00000617451 GORASP2Q9H8Y8 452 aa20.64■□□□□ 0.89
PTPRF-216ENST00000617451 SPAG4Q9NPE6 437 aa20.64■□□□□ 0.89
PTPRF-216ENST00000617451 ACOXLQ9NUZ1 547 aa20.64■□□□□ 0.89
PTPRF-216ENST00000617451 MRPL15Q9P015 296 aaKnown RBP20.64■□□□□ 0.89
PTPRF-216ENST00000617451 TRAV38-1A0A0B4J264 116 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 OOEPA6NGQ2 149 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 OR10H3O60404 316 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 GMNNO75496 209 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 ZNF823P16415 610 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 GSSP48637 474 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 RPL15P61313 204 aaKnown RBP20.63■□□□□ 0.89
PTPRF-216ENST00000617451 SLC35F1Q5T1Q4 408 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 METTL11BQ5VVY1 283 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 BRICD5Q6PL45 260 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 OR2AE1Q8NHA4 323 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 PYURFQ96I23 114 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 TRIM15Q9C019 465 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 SIRPDQ9H106 197 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 RASSF4Q9H2L5 321 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 V9GYQ6 96 aa20.63■□□□□ 0.89
PTPRF-216ENST00000617451 IGHV1-69DA0A0B4J2H0 117 aa20.62■□□□□ 0.89
PTPRF-216ENST00000617451 C5orf63A6NC05 138 aa20.62■□□□□ 0.89
PTPRF-216ENST00000617451 GGT3PA6NGU5 568 aa20.62■□□□□ 0.89
PTPRF-216ENST00000617451 IGHV1-69P01742 117 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms