RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 FBXW12Q6X9E4 464 aa11.46□□□□□ -0.57
LINC00540-202ENST00000616974 RHOXF1Q8NHV9 184 aa11.46□□□□□ -0.57
LINC00540-202ENST00000616974 SGK3Q96BR1 496 aa11.46□□□□□ -0.57
LINC00540-202ENST00000616974 HAVCR1Q96D42 359 aa11.46□□□□□ -0.57
LINC00540-202ENST00000616974 H2AFY2Q9P0M6 372 aaPredicted RBP11.46□□□□□ -0.57
LINC00540-202ENST00000616974 H2BFMP0C1H6 154 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 HSD11B1P28845 292 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 SNRPGP62308 76 aaKnown RBP11.45□□□□□ -0.58
LINC00540-202ENST00000616974 MVKQ03426 396 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 ZNF91Q05481 1191 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 SLC34A1Q06495 639 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 ECH1Q13011 328 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 SHEQ5VZ18 495 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 ZNF322Q6U7Q0 402 aaPredicted RBP11.45□□□□□ -0.58
LINC00540-202ENST00000616974 ZNF771Q7L3S4 317 aaPredicted RBP11.45□□□□□ -0.58
LINC00540-202ENST00000616974 OR10H4Q8NGA5 316 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 SPTSSAQ969W0 71 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 RNFT2Q96EX2 444 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 PRRG3Q9BZD7 231 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 BPESC1Q9GZL8 116 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 NARFLQ9H6Q4 476 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 PCDHGB5Q9Y5G0 923 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 J3QRE1 110 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 KITLGP21583 273 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 ACKR3P25106 362 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 IL2RGP31785 369 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 DOC2BQ14184 412 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 ODF4Q2M2E3 257 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 C6orf52Q5T4I8 152 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 KRT77Q7Z794 578 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 GID4Q8IVV7 300 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 OR8B12Q8NGG6 310 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 C10orf105Q8TEF2 133 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 LGALS12Q96DT0 336 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 OR8B4Q96RC9 309 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 YIPF3Q9GZM5 350 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 HAO2Q9NYQ3 351 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 IKZF2Q9UKS7 526 aa11.45□□□□□ -0.58
LINC00540-202ENST00000616974 LRP5LA4QPB2 252 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 F5H5P2 479 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 SRSF10O75494 262 aaKnown RBP11.44□□□□□ -0.58
LINC00540-202ENST00000616974 RPP14O95059 124 aaKnown RBP11.44□□□□□ -0.58
LINC00540-202ENST00000616974 MTNR1AP48039 350 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 KRTAP1-1Q07627 177 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 TP53I3Q53FA7 332 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 LCN1P1Q5VSP4 162 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 ZNF691Q5VV52 312 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 PRSS57Q6UWY2 283 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 DRAM2Q6UX65 266 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 OR2Z1Q8NG97 314 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 OR56B2PQ8NGI1 322 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 DCLRE1CQ96SD1 692 aaKnown RBP11.44□□□□□ -0.58
LINC00540-202ENST00000616974 ZNF649Q9BS31 505 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 ADI1Q9BV57 179 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 REPIN1Q9BWE0 567 aaKnown RBP11.44□□□□□ -0.58
LINC00540-202ENST00000616974 CLN6Q9NWW5 311 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 FAM206AQ9NX38 181 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 IGHV4-61A0A0C4DH41 118 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 A6NIN4 97 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 DBTP11182 482 aaKnown RBP11.44□□□□□ -0.58
LINC00540-202ENST00000616974 CD99P14209 185 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 RAC2P15153 192 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 PSMB10P40306 273 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 ISL1P61371 349 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 FAM3AP98173 230 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 IL5RAQ01344 420 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 ZNF684Q5T5D7 378 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 ARL9Q6T311 187 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 PGAP1Q75T13 922 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 FAM168AQ92567 244 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 REG4Q9BYZ8 158 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 RAB1BQ9H0U4 201 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 MS4A5Q9H3V2 200 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 ACOXLQ9NUZ1 547 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 WARS2Q9UGM6 360 aaKnown RBP11.44□□□□□ -0.58
LINC00540-202ENST00000616974 SLC22A13Q9Y226 551 aa11.44□□□□□ -0.58
LINC00540-202ENST00000616974 RP2O75695 350 aa11.43□□□□□ -0.58
LINC00540-202ENST00000616974 ZNF205O95201 554 aa11.43□□□□□ -0.58
LINC00540-202ENST00000616974 CA6P23280 308 aa11.43□□□□□ -0.58
LINC00540-202ENST00000616974 RGS6P49758 472 aa11.43□□□□□ -0.58
LINC00540-202ENST00000616974 GRB2P62993 217 aaKnown RBP11.43□□□□□ -0.58
LINC00540-202ENST00000616974 OCLNQ16625 522 aa11.43□□□□□ -0.58
LINC00540-202ENST00000616974 ZNF454Q8N9F8 522 aa11.43□□□□□ -0.58
LINC00540-202ENST00000616974 ZNF420Q8TAQ5 688 aaPredicted RBP11.43□□□□□ -0.58
LINC00540-202ENST00000616974 ITLN1Q8WWA0 313 aa11.43□□□□□ -0.58
LINC00540-202ENST00000616974 SGCDQ92629 289 aa11.43□□□□□ -0.58
LINC00540-202ENST00000616974 ELMOD3Q96FG2 381 aa11.43□□□□□ -0.58
LINC00540-202ENST00000616974 COX4I2Q96KJ9 171 aa11.43□□□□□ -0.58
LINC00540-202ENST00000616974 ZNF275Q9NSD4 429 aaPredicted RBP11.43□□□□□ -0.58
LINC00540-202ENST00000616974 PLSCR5A0PG75 271 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 CD300LBA8K4G0 201 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 VSTM5A8MXK1 200 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 IQCF6A8MYZ5 107 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 VWC2LB2RUY7 222 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 H0YHG0 523 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 BMP4P12644 408 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 SLC15A1P46059 708 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 PSMA6P60900 246 aaKnown RBP11.42□□□□□ -0.58
LINC00540-202ENST00000616974 ROM1Q03395 351 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 MAB21L1Q13394 359 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms