RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 DBTP11182 482 aaKnown RBP14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 DCTDP32321 178 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 ZNF81P51508 661 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 PRSS12P56730 875 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 PSMA6P60900 246 aaKnown RBP14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 ISL1P61371 349 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 ZNF91Q05481 1191 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 EGR3Q06889 387 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 OR2T2Q6IF00 324 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 FAM57BQ71RH2 274 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 PGAP1Q75T13 922 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 TGIF2LYQ8IUE0 185 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 ZNF525Q8N782 197 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 SETD9Q8NE22 299 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 OR52H1Q8NGJ2 320 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 REPIN1Q9BWE0 567 aaKnown RBP14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 MSL2Q9HCI7 577 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 AMBNQ9NP70 447 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 BRD7Q9NPI1 651 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 ZNF319Q9P2F9 582 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 IKZF2Q9UKS7 526 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 MAGEB4O15481 346 aaPredicted RBP14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 TBX1O43435 398 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 XRCC2O43543 280 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 MAGEB1P43366 347 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 SMN1Q16637 294 aaKnown RBP14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 Q6ZR03 302 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 MRPL21Q7Z2W9 205 aaKnown RBP14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 OR5AS1Q8N127 324 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 CNIH3Q8TBE1 160 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 TFAP2CQ92754 450 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 SPSB4Q96A44 273 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 LGALS12Q96DT0 336 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 Q9H521 79 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 NKIRAS2Q9NYR9 191 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 MRM2Q9UI43 246 aaKnown RBP14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 EXOGQ9Y2C4 368 aaKnown RBP14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 LRCH1Q9Y2L9 728 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 TMEM269A0A1B0GVZ9 245 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 IQCF6A8MYZ5 107 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 SPRY3O43610 288 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 NCR1O76036 304 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 IGHV1-46P01743 117 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 HPXP02790 462 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 ADH4P08319 380 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 SELEP16581 610 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 RIDAP52758 137 aaKnown RBP14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 CCL8P80075 99 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 PCGF3Q3KNV8 242 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 ZMAT1Q5H9K5 638 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 ZNF684Q5T5D7 378 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 BHLHE23Q8NDY6 225 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 OR8G5Q8NG78 346 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 SGK3Q96BR1 496 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 PGAM5Q96HS1 289 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 FAM206AQ9NX38 181 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 ZDHHC8Q9ULC8 765 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 RPL36Q9Y3U8 105 aaKnown RBP14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 HSPE1-MOB4S4R3N1 261 aa14.09□□□□□ -0.15
CCDC28A-202ENST00000611852 TRIM64A6NGJ6 449 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 TRIM64BA6NI03 449 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 LILRA1O75019 489 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 DAOP14920 347 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 MMP16P51512 607 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 ACTC1P68032 377 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 ACTA1P68133 377 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 ZNF85Q03923 595 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 CDK5R2Q13319 367 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 TIGD6Q17RP2 521 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 CLEC2AQ6UVW9 174 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 C8orf59Q8N0T1 100 aaPredicted RBP14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 REEP6Q96HR9 211 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 OR10A2Q9H208 303 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 OPA3Q9H6K4 179 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 MYOZ1Q9NP98 299 aaPredicted RBP14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 MRPS18AQ9NVS2 196 aaKnown RBP14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 PCDHGB1Q9Y5G3 927 aa14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 FLNAP21333 2647 aaKnown RBP14.08□□□□□ -0.16
CCDC28A-202ENST00000611852 HIVEP1P15822 2718 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 ACOD1A6NK06 481 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 CD300LBA8K4G0 201 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 SRSF10O75494 262 aaKnown RBP14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 PNPP00491 289 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 KRT8P05787 483 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 DSCR9P59020 149 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 RAB40BQ12829 278 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 TNK1Q13470 666 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 TSTQ16762 297 aaKnown RBP14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 ZNF829Q3KNS6 432 aaPredicted RBP14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 FAM209AQ5JX71 171 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 C6orf52Q5T4I8 152 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 PLEKHG7Q6ZR37 379 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 ACBD7Q8N6N7 88 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 OR8B12Q8NGG6 310 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 UBASH3BQ8TF42 649 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 FAM168AQ92567 244 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 DIRC2Q96SL1 478 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 RGCCQ9H4X1 137 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 RAB26Q9ULW5 256 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 MYRFQ9Y2G1 1151 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms