RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 COLCA1Q6ZS62 124 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 TMPRSS11FQ6ZWK6 438 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 MBOAT2Q6ZWT7 520 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 PGAP1Q75T13 922 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 SLC36A1Q7Z2H8 476 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 MRPL21Q7Z2W9 205 aaKnown RBP5.22□□□□□ -1.57
CUX1-220ENST00000607092 ARPINQ7Z6K5 226 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 NRMQ8IXM6 262 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 OR5AS1Q8N127 324 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 FTMTQ8N4E7 242 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 OR4S1Q8NGB4 309 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 OR4C15Q8NGM1 316 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 OR2AJ1Q8NGZ0 328 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 ZNF420Q8TAQ5 688 aaPredicted RBP5.22□□□□□ -1.57
CUX1-220ENST00000607092 SPTSSAQ969W0 71 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 CDADC1Q9BWV3 514 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 CNTD2Q9H8S5 307 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 SP140LQ9H930 580 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 EMC7Q9NPA0 242 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 SAR1AQ9NR31 198 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 TNFRSF19Q9NS68 423 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 VSX1Q9NZR4 365 aaPredicted RBP5.22□□□□□ -1.57
CUX1-220ENST00000607092 KAAG1Q9UBP8 84 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 FBLN5Q9UBX5 448 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 KCNG2Q9UJ96 466 aa5.22□□□□□ -1.57
CUX1-220ENST00000607092 TMA7Q9Y2S6 64 aaKnown RBP5.22□□□□□ -1.57
CUX1-220ENST00000607092 STAB2Q8WWQ8 2551 aa5.21□□□□□ -1.57
CUX1-220ENST00000607092 TRAV27A0A087WT01 109 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 MDFIC2A0A1B0GVS7 189 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 OOEPA6NGQ2 149 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 MLNRO43193 412 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 CCDC22O60826 627 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 FAM20BO75063 409 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 TIPRLO75663 272 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 DNAJC8O75937 253 aaPredicted RBP5.21□□□□□ -1.58
CUX1-220ENST00000607092 ZNF205O95201 554 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 APOC1P02654 83 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 OPN1MWP04001 364 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 OPN1MW2P0DN77 364 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 OPN1MW3P0DN78 364 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 MMP9P14780 707 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 MUC1P15941 1255 aaPredicted RBP5.21□□□□□ -1.58
CUX1-220ENST00000607092 CTLA4P16410 223 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 GABRA5P31644 462 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 NAA10P41227 235 aaPredicted RBP5.21□□□□□ -1.58
CUX1-220ENST00000607092 HIST1H3AP68431 136 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 ACSM1Q08AH1 577 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 COX10Q12887 443 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 KRR1Q13601 381 aaKnown RBP5.21□□□□□ -1.58
CUX1-220ENST00000607092 BLMHQ13867 455 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 HERPUD1Q15011 391 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 OR8B8Q15620 311 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 AANATQ16613 207 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 MICBQ29980 383 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 LRRC23Q53EV4 343 aaPredicted RBP5.21□□□□□ -1.58
CUX1-220ENST00000607092 KPRPQ5T749 579 aaPredicted RBP5.21□□□□□ -1.58
CUX1-220ENST00000607092 HIST2H3PS2Q5TEC6 136 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 NCR3LG1Q68D85 454 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 NANOGP8Q6NSW7 305 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 DPY19L2P2Q6ZN68 376 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 C1orf122Q6ZSJ8 110 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 HIST2H3AQ71DI3 136 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 TSPYL5Q86VY4 417 aaPredicted RBP5.21□□□□□ -1.58
CUX1-220ENST00000607092 JAZF1Q86VZ6 243 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 CALHM3Q86XJ0 350 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 LRRC75AQ8NAA5 344 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 BHLHE23Q8NDY6 225 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 OR2T12Q8NG77 320 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 OR4C13Q8NGP0 309 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 OR2T6Q8NHC8 308 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 FAM110DQ8TAY7 271 aaPredicted RBP5.21□□□□□ -1.58
CUX1-220ENST00000607092 LHX4Q969G2 390 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 C12orf43Q96C57 262 aaKnown RBP5.21□□□□□ -1.58
CUX1-220ENST00000607092 TBX15Q96SF7 602 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 GPX7Q96SL4 187 aaPredicted RBP5.21□□□□□ -1.58
CUX1-220ENST00000607092 EBF4Q9BQW3 602 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 DNTTIP1Q9H147 329 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 SYT4Q9H2B2 425 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 RERGLQ9H628 205 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 RANBP3Q9H6Z4 567 aaPredicted RBP5.21□□□□□ -1.58
CUX1-220ENST00000607092 RNPEPL1Q9HAU8 725 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 NRIP3Q9NQ35 241 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 MRPL15Q9P015 296 aaKnown RBP5.21□□□□□ -1.58
CUX1-220ENST00000607092 RPS6KA6Q9UK32 745 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 TMCC3Q9ULS5 477 aa5.21□□□□□ -1.58
CUX1-220ENST00000607092 FAM32AQ9Y421 112 aaKnown RBP5.21□□□□□ -1.58
CUX1-220ENST00000607092 ZNF816-ZNF321PA0A0X1KG74 233 aa5.2□□□□□ -1.58
CUX1-220ENST00000607092 GGT3PA6NGU5 568 aa5.2□□□□□ -1.58
CUX1-220ENST00000607092 FAM220BPB1ANY3 271 aa5.2□□□□□ -1.58
CUX1-220ENST00000607092 C22orf46C9J442 243 aa5.2□□□□□ -1.58
CUX1-220ENST00000607092 H3BUI4 141 aa5.2□□□□□ -1.58
CUX1-220ENST00000607092 IMPA2O14732 288 aa5.2□□□□□ -1.58
CUX1-220ENST00000607092 RER1O15258 196 aa5.2□□□□□ -1.58
CUX1-220ENST00000607092 IDH3BO43837 385 aa5.2□□□□□ -1.58
CUX1-220ENST00000607092 TXNDC12O95881 172 aa5.2□□□□□ -1.58
CUX1-220ENST00000607092 RENP00797 406 aa5.2□□□□□ -1.58
CUX1-220ENST00000607092 GHRHP01286 108 aa5.2□□□□□ -1.58
CUX1-220ENST00000607092 IGHV4-59P01825 116 aa5.2□□□□□ -1.58
CUX1-220ENST00000607092 LCATP04180 440 aa5.2□□□□□ -1.58
CUX1-220ENST00000607092 SFTPBP07988 381 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms