RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 SH3BGRP55822 239 aaPredicted RBP10.96□□□□□ -0.65
UPF1-208ENST00000600012 TAS2R43P59537 309 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 RPS25P62851 125 aaKnown RBP10.96□□□□□ -0.65
UPF1-208ENST00000600012 TUBA1BP68363 451 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 HIST1H3AP68431 136 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 BDH1Q02338 343 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 ROM1Q03395 351 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 TPBGQ13641 420 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 CDK5R1Q15078 307 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 HIKESHIQ53FT3 197 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 CCDC92Q53HC0 331 aaPredicted RBP10.96□□□□□ -0.65
UPF1-208ENST00000600012 HIST2H3PS2Q5TEC6 136 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 AGAP6Q5VW22 663 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 ARL9Q6T311 187 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 HIST2H3AQ71DI3 136 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 TUBA1AQ71U36 451 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 ZNF627Q7L945 461 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 PHC2Q8IXK0 858 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 GJC3Q8NFK1 279 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 RPL3LQ92901 407 aaKnown RBP10.96□□□□□ -0.65
UPF1-208ENST00000600012 RNF166Q96A37 237 aaPredicted RBP10.96□□□□□ -0.65
UPF1-208ENST00000600012 RADILQ96JH8 1075 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 MYCBPQ99417 103 aaPredicted RBP10.96□□□□□ -0.65
UPF1-208ENST00000600012 MROQ9BYG7 248 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 ZNF224Q9NZL3 707 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 ENPP5Q9UJA9 477 aa10.96□□□□□ -0.65
UPF1-208ENST00000600012 ZNF503-AS2A6NEH8 195 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 A8MV72 311 aaPredicted RBP10.95□□□□□ -0.66
UPF1-208ENST00000600012 ABCD4O14678 606 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 SSX4O60224 188 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 DOK2O60496 412 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 HLA-HP01893 362 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 TACSTD2P09758 323 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 CAPZA2P47755 286 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 GDI2P50395 445 aaKnown RBP10.95□□□□□ -0.66
UPF1-208ENST00000600012 NANOS3P60323 173 aaKnown RBP10.95□□□□□ -0.66
UPF1-208ENST00000600012 SLC3A1Q07837 685 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 MFGE8Q08431 387 aaPredicted RBP10.95□□□□□ -0.66
UPF1-208ENST00000600012 SCRN3Q0VDG4 424 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 CHRFAM7AQ494W8 412 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 NRN1LQ496H8 165 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 ZNF774Q6NX45 483 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 ANKRD16Q6P6B7 361 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 SLC16A12Q6ZSM3 486 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 KCTD20Q7Z5Y7 419 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 ZNF433Q8N7K0 673 aaPredicted RBP10.95□□□□□ -0.66
UPF1-208ENST00000600012 AKR7LQ8NHP1 331 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 TMEM158Q8WZ71 300 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 BCL2L2Q92843 193 aaPredicted RBP10.95□□□□□ -0.66
UPF1-208ENST00000600012 OR51E2Q9H255 320 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 KCNN2Q9H2S1 579 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 NOX3Q9HBY0 568 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 NDUFB11Q9NX14 153 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 NPAP1Q9NZP6 1156 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 GTF2A1LQ9UNN4 478 aa10.95□□□□□ -0.66
UPF1-208ENST00000600012 ANK3Q12955 4377 aaKnown RBP10.95□□□□□ -0.66
UPF1-208ENST00000600012 TRBV2A0A0J9YWF9 115 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 CIB4A0PJX0 185 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 OR5H1A6NKK0 313 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 OGG1O15527 345 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 SGCEO43556 437 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 ZNF254O75437 659 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 PNPP00491 289 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 MMP7P09237 267 aaPredicted RBP10.94□□□□□ -0.66
UPF1-208ENST00000600012 HSD11B1P28845 292 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 KIR3DL2P43630 455 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 TGM4P49221 684 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 PRKXP51817 358 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 DSCR9P59020 149 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 PCBD1P61457 104 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 LSM3P62310 102 aaKnown RBP10.94□□□□□ -0.66
UPF1-208ENST00000600012 ALKBH1Q13686 389 aaKnown RBP10.94□□□□□ -0.66
UPF1-208ENST00000600012 RAB35Q15286 201 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 TAF13Q15543 124 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 TBRG1Q3YBR2 411 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 WDR38Q5JTN6 314 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 ELFN2Q5R3F8 820 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 DMKNQ6E0U4 476 aaPredicted RBP10.94□□□□□ -0.66
UPF1-208ENST00000600012 TMEM108Q6UXF1 575 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 ANKRD13BQ86YJ7 626 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.94□□□□□ -0.66
UPF1-208ENST00000600012 SLC7A6Q92536 515 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 TMEM203Q969S6 136 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 ISOC1Q96CN7 298 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 SMIM19Q96E16 107 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 PGLYRP3Q96LB9 341 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 C4orf45Q96LM5 186 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 ATF6BQ99941 703 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 CHCHD6Q9BRQ6 235 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 TMED9Q9BVK6 235 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 OR2H1Q9GZK4 316 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 FAM192AQ9GZU8 254 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 WNT5BQ9H1J7 359 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 RNF121Q9H920 327 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 DDX28Q9NUL7 540 aaKnown RBP10.94□□□□□ -0.66
UPF1-208ENST00000600012 PLEK2Q9NYT0 353 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 NDUFA13Q9P0J0 144 aa10.94□□□□□ -0.66
UPF1-208ENST00000600012 RSL24D1Q9UHA3 163 aaKnown RBP10.94□□□□□ -0.66
UPF1-208ENST00000600012 SF3B6Q9Y3B4 125 aaKnown RBP10.94□□□□□ -0.66
UPF1-208ENST00000600012 IGHV4-30-2A0A087WSY4 118 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms