RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 FAM209AQ5JX71 171 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 ZNF684Q5T5D7 378 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 DEGS2Q6QHC5 323 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 SLC35F2Q8IXU6 374 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 OR8G5Q8NG78 346 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 APH1BQ8WW43 257 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 SGK3Q96BR1 496 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 OR8B4Q96RC9 309 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 SLC30A2Q9BRI3 323 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 BPESC1Q9GZL8 116 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 CYSLTR2Q9NS75 346 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 CLN6Q9NWW5 311 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 SMPD3Q9NY59 655 aaPredicted RBP16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 LAMP5Q9UJQ1 280 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 DYSFO75923 2080 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 FN1P02751 2386 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 PSMD9O00233 223 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 SMAD7O15105 426 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 APOL3O95236 402 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 H2BFMP0C1H6 154 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 SLC25A16P16260 332 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 PSMA6P60900 246 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 TSTQ16762 297 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 LRRC36Q1X8D7 754 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 USP51Q70EK9 711 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 OR5AS1Q8N127 324 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 GALNT4Q8N4A0 578 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 ZNF283Q8N7M2 679 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 OR51G2Q8NGK0 314 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 RHOXF1Q8NHV9 184 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 RDH5Q92781 318 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 TTTY10Q9BZA0 68 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 FAM206AQ9NX38 181 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 ZDHHC8Q9ULC8 765 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 GMPPBQ9Y5P6 360 aa16.54■□□□□ 0.24
SHKBP1-221ENST00000599833 IGHV4-61A0A0C4DH41 118 aa16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 PLSCR5A0PG75 271 aa16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 H0YL77 283 aa16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 MAGEB4O15481 346 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 IGLV3-1P01715 115 aa16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 ERCC1P07992 297 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 HSD11B1P28845 292 aa16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 CRYBB2P43320 205 aa16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 LOXL1Q08397 574 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 TMED1Q13445 227 aa16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 TAF13Q15543 124 aa16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 ZNF679Q8IYX0 411 aa16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 PACRGLQ8N7B6 248 aa16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 RNF166Q96A37 237 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 LYZL4Q96KX0 146 aa16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 MNTQ99583 582 aa16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 SOX7Q9BT81 388 aa16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 DCLRE1BQ9H816 532 aa16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 ZNF275Q9NSD4 429 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 H2AFY2Q9P0M6 372 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 MRM2Q9UI43 246 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-221ENST00000599833 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 hCG_38984A0A1B0GV85 526 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 PNPP00491 289 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 TACSTD2P09758 323 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 ACHEP22303 614 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 DCTDP32321 178 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 CXCR4P61073 352 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 ADARB1P78563 741 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 FAM3AP98173 230 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 FAM57BQ71RH2 274 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 PGAP1Q75T13 922 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 BIVMQ86UB2 503 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 OR8B12Q8NGG6 310 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 NRG4Q8WWG1 115 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 ASB17Q8WXJ9 295 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 DIRC2Q96SL1 478 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 CHODLQ9H9P2 273 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 IMPAD1Q9NX62 359 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 DCAF16Q9NXF7 216 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 TMEM14AQ9Y6G1 99 aa16.52■□□□□ 0.24
SHKBP1-221ENST00000599833 A0A1W2PQL4 384 aaPredicted RBP16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 CD300LBA8K4G0 201 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 WNT9BO14905 357 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 ZNF254O75437 659 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 WBP4O75554 376 aaKnown RBP16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 LY6G6DO95868 133 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 APOC1P02654 83 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 MT-ND5P03915 603 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 ISL1P61371 349 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 ZNF85Q03923 595 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 MFGE8Q08431 387 aaPredicted RBP16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 MALLQ13021 153 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 ZMAT1Q5H9K5 638 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 ZNF322Q6U7Q0 402 aaPredicted RBP16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 BHLHE23Q8NDY6 225 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 ELMOD3Q96FG2 381 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 APOL4Q9BPW4 351 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 PIMREGQ9BSJ6 248 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 NIPAL2Q9H841 368 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 SAP30LQ9HAJ7 183 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 C8orf4Q9NR00 106 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 MALRD1Q5VYJ5 2156 aa16.51■□□□□ 0.23
SHKBP1-221ENST00000599833 SONP18583 2426 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-221ENST00000599833 IGHV1-69-2A0A0G2JMI3 117 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms