RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 F5H5P2 479 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 CCNB2O95067 398 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 GPANK1O95872 356 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 HLA-DQA2P01906 255 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 RPS2P15880 293 aaKnown RBP12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 FMO3P31513 532 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 MTNR1AP48039 350 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 GNB2P62879 340 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 MICAQ29983 383 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 CLEC12AQ5QGZ9 265 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 MRPL21Q7Z2W9 205 aaKnown RBP12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 LINC00346Q8IVM7 164 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 C3orf56Q8N813 242 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 PROKR2Q8NFJ6 384 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 OR2T33Q8NG76 320 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 OR8B3Q8NGG8 313 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 OR10S1Q8NGN2 331 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 OR8B2Q96RD0 313 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 KCNJ15Q99712 375 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 C1orf21Q9H246 121 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 FN3KRPQ9HA64 309 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 PRPF19Q9UMS4 504 aaKnown RBP12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 COMMD3-BMI1R4GMX3 469 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 V9GYQ6 96 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 TRRAPQ9Y4A5 3859 aa12.12□□□□□ -0.47
SMARCE1-216ENST00000580419 H0YL77 283 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 XRCC2O43543 280 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 GASTP01350 101 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 IFNGP01579 166 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 RNASE1P07998 156 aaKnown RBP12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 MSX2P35548 267 aaPredicted RBP12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 CFHR2P36980 270 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 PMELP40967 661 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 SLC15A1P46059 708 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 ENTPD1P49961 510 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 SEC61A1P61619 476 aaKnown RBP12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 SNCBQ16143 134 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 OTPQ5XKR4 325 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 CD276Q5ZPR3 534 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 OR2T5Q6IEZ7 315 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 MOGAT3Q86VF5 341 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 SLC37A3Q8NCC5 494 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 OR2T29Q8NH02 315 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 ZNF420Q8TAQ5 688 aaPredicted RBP12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 SPRYD4Q8WW59 207 aaPredicted RBP12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 SLCO4A1Q96BD0 722 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 EGLN3Q9H6Z9 239 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 MARCH7Q9H992 704 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 CMC2Q9NRP2 79 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 RNF7Q9UBF6 113 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 ZNF69Q9UC07 566 aa12.11□□□□□ -0.47
SMARCE1-216ENST00000580419 POM121CA8CG34 1229 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 ZNF878C9JN71 531 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 TNFRSF13BO14836 293 aaPredicted RBP12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 CYB5R3P00387 301 aaPredicted RBP12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 CALB2P22676 271 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 CFL1P23528 166 aaKnown RBP12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 PITPNBP48739 271 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 GRB2P62993 217 aaKnown RBP12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 GNGT1P63211 74 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 ZNF92Q03936 586 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 FAM98BQ52LJ0 330 aaKnown RBP12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 AWAT1Q58HT5 328 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 SLC35F1Q5T1Q4 408 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 WDR25Q64LD2 544 aaPredicted RBP12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 ZNF841Q6ZN19 808 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 DHFR2Q86XF0 187 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 BHLHE23Q8NDY6 225 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 OR9Q2Q8NGE9 314 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 OR52H1Q8NGJ2 320 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 OR8D4Q8NGM9 314 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 ASB9Q96DX5 294 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 NSL1Q96IY1 281 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 ZNF747Q9BV97 191 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 PLA2G12AQ9BZM1 189 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 REEP1Q9H902 201 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 C14orf119Q9NWQ9 140 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 KAAG1Q9UBP8 84 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 CLN8Q9UBY8 286 aa12.1□□□□□ -0.47
SMARCE1-216ENST00000580419 TRAV38-1A0A0B4J264 116 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 LGALS8O00214 317 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 ENSAO43768 121 aaKnown RBP12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 TIPRLO75663 272 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 SPI1P17947 270 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 ATP6V1B2P21281 511 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 MXRA7P84157 204 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 OR8G1Q15617 311 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 LINC01590Q5TEZ4 76 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 DCXRQ7Z4W1 244 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 NAA40Q86UY6 237 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 PARP8Q8N3A8 854 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 FITM2Q8N6M3 262 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 AQP11Q8NBQ7 271 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 SLC25A28Q96A46 364 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 SLAMF6Q96DU3 332 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 TSSK6Q9BXA6 273 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 RGCCQ9H4X1 137 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 RNPEPL1Q9HAU8 725 aa12.09□□□□□ -0.47
SMARCE1-216ENST00000580419 TBC1D23Q9NUY8 699 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms