RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 RAD52P43351 418 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 RPS25P62851 125 aaKnown RBP9.28□□□□□ -0.92
SS18-213ENST00000579640 SNAI3Q3KNW1 292 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 CD200R1LQ6Q8B3 271 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 PAMR1Q6UXH9 720 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 DOK3Q7L591 496 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 ANKRD13BQ86YJ7 626 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 PAQR4Q8N4S7 273 aaPredicted RBP9.28□□□□□ -0.92
SS18-213ENST00000579640 PHYHIPQ92561 330 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 AKAP1Q92667 903 aaKnown RBP eCLIP9.28□□□□□ -0.92
SS18-213ENST00000579640 PPP1R14AQ96A00 147 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 BCL7BQ9BQE9 202 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 TMED9Q9BVK6 235 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 BCL2L14Q9BZR8 327 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 ESRP2Q9H6T0 727 aaKnown RBP9.28□□□□□ -0.92
SS18-213ENST00000579640 SLC24A3Q9HC58 644 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 NPDC1Q9NQX5 325 aaPredicted RBP9.28□□□□□ -0.92
SS18-213ENST00000579640 ZNF319Q9P2F9 582 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 SSR3Q9UNL2 185 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 KLF2Q9Y5W3 355 aaPredicted RBP9.28□□□□□ -0.92
SS18-213ENST00000579640 LOC107986453A0A1B0GWG9 222 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 DPPA5A6NC42 116 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 J3QKU1 62 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 P2RY10O00398 339 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 CASKO14936 926 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 SYT7O43581 403 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 SMPD2O60906 423 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 NOL3O60936 208 aaKnown RBP9.28□□□□□ -0.92
SS18-213ENST00000579640 MTRF1O75570 445 aaKnown RBP9.28□□□□□ -0.92
SS18-213ENST00000579640 GATBO75879 557 aaKnown RBP9.28□□□□□ -0.92
SS18-213ENST00000579640 RGS9O75916 674 aaPredicted RBP9.28□□□□□ -0.92
SS18-213ENST00000579640 ATE1O95260 518 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 GADD45AP24522 165 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 MAPK3P27361 379 aaPredicted RBP9.28□□□□□ -0.92
SS18-213ENST00000579640 TMBIM6P55061 237 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 UCP2P55851 309 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 ODF4Q2M2E3 257 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 Q499Y3 187 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 GPR107Q5VW38 600 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 COMMD2Q86X83 199 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 CLVS1Q8IUQ0 354 aaPredicted RBP9.28□□□□□ -0.92
SS18-213ENST00000579640 ZNF420Q8TAQ5 688 aaPredicted RBP9.28□□□□□ -0.92
SS18-213ENST00000579640 LINC01560Q8TB33 94 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 ABHD4Q8TB40 342 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 OR51E1Q8TCB6 317 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 TMEM203Q969S6 136 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 SPSB4Q96A44 273 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 SGK3Q96BR1 496 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 REEP6Q96HR9 211 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 GPR84Q9NQS5 396 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 ENPP5Q9UJA9 477 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 TRBV5-5A0A0J9YX44 114 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 A0A1B0GTI1 187 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 LOC390937A0A1W2PQ73 354 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 DHRS7CA6NNS2 312 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 AIREO43918 545 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 SC5DO75845 299 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 GABARAPO95166 117 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 CALCRP30988 508 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 FGF9P31371 208 aaPredicted RBP9.27□□□□□ -0.93
SS18-213ENST00000579640 CRYBB2P43320 205 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 RPS11P62280 158 aaKnown RBP eCLIP9.27□□□□□ -0.93
SS18-213ENST00000579640 ACSM3Q53FZ2 586 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 BEX5Q5H9J7 111 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 GLYATL3Q5SZD4 288 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 Q6ZSR3 168 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 RFPL4BQ6ZWI9 263 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 ZNF101Q8IZC7 436 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 RDH10Q8IZV5 341 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 PLPP7Q8NBV4 271 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 SSC4DQ8WTU2 575 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 RAB2BQ8WUD1 216 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 RGP1Q92546 391 aaPredicted RBP9.27□□□□□ -0.93
SS18-213ENST00000579640 RADILQ96JH8 1075 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 FAM192AQ9GZU8 254 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 DHDHQ9UQ10 334 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 GSTK1Q9Y2Q3 226 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 STARD10Q9Y365 291 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 RTTNQ86VV8 2226 aa9.27□□□□□ -0.93
SS18-213ENST00000579640 DPRXA6NFQ7 191 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 A6NHS1 94 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 ZNF879B4DU55 563 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 H3BSA7 217 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 PYCARD-AS1I3L0S3 204 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 ZNF701M0R085 212 aaPredicted RBP9.26□□□□□ -0.93
SS18-213ENST00000579640 GABRPO00591 440 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 GPX5O75715 221 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 DHRS3O75911 302 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 NGFP01138 241 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 RAF1P04049 648 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 CD2P06729 351 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 OCM2P0CE71 109 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 IGFBP2P18065 325 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 NR4A1P22736 598 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 KIR2DL3P43628 341 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 PPP1CBP62140 327 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 RPS23P62266 143 aaKnown RBP9.26□□□□□ -0.93
SS18-213ENST00000579640 FABP5Q01469 135 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 GFOD2Q3B7J2 385 aa9.26□□□□□ -0.93
SS18-213ENST00000579640 NCMAPQ5T1S8 102 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms