RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PTCHD4Q6ZW05 846 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 TMPRSS11FQ6ZWK6 438 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 MBOAT2Q6ZWT7 520 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 ZNF767PQ75MW2 155 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 DOK3Q7L591 496 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 AQP12AQ8IXF9 295 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 C1orf174Q8IYL3 243 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 SVOPQ8N4V2 548 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 DHRSXQ8N5I4 330 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 TEX29Q8N6K0 151 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 C3orf56Q8N813 242 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 OR2T12Q8NG77 320 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 OR13F1Q8NGS4 319 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 SGMS2Q8NHU3 365 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 ITLN1Q8WWA0 313 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 TFAP2CQ92754 450 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 HAVCR1Q96D42 359 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 CMBLQ96DG6 245 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 TPD52L3Q96J77 140 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 CLPTM1LQ96KA5 538 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 SAMD8Q96LT4 415 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 DUX5Q96PT3 197 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 DCLRE1CQ96SD1 692 aaKnown RBP5.64□□□□□ -1.51
VPS53-213ENST00000572334 DIRC2Q96SL1 478 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 ZNF747Q9BV97 191 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 EGLN1Q9GZT9 426 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 ELOVL3Q9HB03 270 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 NEK6Q9HC98 313 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 CYSLTR2Q9NS75 346 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 EIF3KQ9UBQ5 218 aaKnown RBP5.64□□□□□ -1.51
VPS53-213ENST00000572334 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.64□□□□□ -1.51
VPS53-213ENST00000572334 PCDHGB1Q9Y5G3 927 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 INSIG2Q9Y5U4 225 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 TEX13CA0A0J9YWL9 993 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 ELOVL7A1L3X0 281 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 PRSS37A4D1T9 235 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 A6NIZ1 184 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 CEACAM18A8MTB9 384 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 C12orf71A8MTZ7 269 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 EFCAB9A8MZ26 197 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 H0YL77 283 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 TMEM178BH3BS89 294 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 DCTN6O00399 190 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 NME4O00746 187 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 MLNRO43193 412 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 SGCEO43556 437 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 TIMM8AO60220 97 aaPredicted RBP5.63□□□□□ -1.51
VPS53-213ENST00000572334 DOK2O60496 412 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 ABHD16AO95870 558 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 IFNA14P01570 189 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 CD14P08571 375 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 WNT2P09544 360 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 IGHV4-38-2P0DP08 117 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 PRTN3P24158 256 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 EEF1B2P24534 225 aaKnown RBP5.63□□□□□ -1.51
VPS53-213ENST00000572334 CD80P33681 288 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 CAPGP40121 348 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 PMELP40967 661 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 OMPP47874 163 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 HTR5AP47898 357 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 SLC9A3P48764 834 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 MMP16P51512 607 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 TPTEP56180 551 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 RAP1BP61224 184 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 PCBD1P61457 104 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 BTG1P62324 171 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 RAP1AP62834 184 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 HIST1H3AP68431 136 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 S100A12P80511 92 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.63□□□□□ -1.51
VPS53-213ENST00000572334 SLC3A1Q07837 685 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 SCRN3Q0VDG4 424 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 HLXQ14774 488 aaPredicted RBP5.63□□□□□ -1.51
VPS53-213ENST00000572334 TRAM2Q15035 370 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 SEC23BQ15437 767 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 KRTAP27-1Q3LI81 207 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 ZFP69Q49AA0 526 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 PRR31Q5SQ13 230 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 ZNF362Q5T0B9 420 aaPredicted RBP5.63□□□□□ -1.51
VPS53-213ENST00000572334 HIST2H3PS2Q5TEC6 136 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 RSBN1Q5VWQ0 802 aaPredicted RBP5.63□□□□□ -1.51
VPS53-213ENST00000572334 HACD2Q6Y1H2 254 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 HIST2H3AQ71DI3 136 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 CBLL1Q75N03 491 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 OAFQ86UD1 273 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 ELMOD2Q8IZ81 293 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 RNF113BQ8IZP6 322 aaKnown RBP5.63□□□□□ -1.51
VPS53-213ENST00000572334 SLC7A5P1Q8MH63 180 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 BPIFB2Q8N4F0 458 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 OR2Z1Q8NG97 314 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 SETD6Q8TBK2 473 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 SLC7A13Q8TCU3 470 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 ACOT11Q8WXI4 607 aaPredicted RBP5.63□□□□□ -1.51
VPS53-213ENST00000572334 RCN3Q96D15 328 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 RASD2Q96D21 266 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 ZMYND19Q96E35 227 aaPredicted RBP5.63□□□□□ -1.51
VPS53-213ENST00000572334 OR2V2Q96R30 315 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 JMJD8Q96S16 334 aa5.63□□□□□ -1.51
VPS53-213ENST00000572334 GPX7Q96SL4 187 aaPredicted RBP5.63□□□□□ -1.51
VPS53-213ENST00000572334 CDRT15Q96T59 188 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms