RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 FAM90A1Q86YD7 464 aa16.32■□□□□ 0.2
CCDC40-206ENST00000572083 LINC00346Q8IVM7 164 aa16.32■□□□□ 0.2
CCDC40-206ENST00000572083 RNF113BQ8IZP6 322 aaKnown RBP16.32■□□□□ 0.2
CCDC40-206ENST00000572083 SH3GL1Q99961 368 aa16.32■□□□□ 0.2
CCDC40-206ENST00000572083 NDEL1Q9GZM8 345 aa16.32■□□□□ 0.2
CCDC40-206ENST00000572083 TOR3AQ9H497 397 aa16.32■□□□□ 0.2
CCDC40-206ENST00000572083 TRIM36Q9NQ86 728 aa16.32■□□□□ 0.2
CCDC40-206ENST00000572083 SIRT7Q9NRC8 400 aa16.32■□□□□ 0.2
CCDC40-206ENST00000572083 C1orf123Q9NWV4 160 aa16.32■□□□□ 0.2
CCDC40-206ENST00000572083 SIGLEC9Q9Y336 463 aa16.32■□□□□ 0.2
CCDC40-206ENST00000572083 KPTNQ9Y664 436 aa16.32■□□□□ 0.2
CCDC40-206ENST00000572083 IGHV3OR15-7A0A075B7D8 119 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 A0A1B0GW55 424 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 ANKRD61A6NGH8 418 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 DCTN6O00399 190 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 NDUFA2O43678 99 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 LCATP04180 440 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 IFNW1P05000 195 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 DUX4L2P0CJ85 424 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 DUX4L3P0CJ86 424 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 DUX4L4P0CJ87 422 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 DUX4L5P0CJ88 424 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 DUX4L6P0CJ89 424 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 DUX4L7P0CJ90 424 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 GABRA5P31644 462 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 DLX1P56177 255 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 SELENOWP63302 87 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 KRTAP27-1Q3LI81 207 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 DUX4L9Q6RFH8 374 aaPredicted RBP16.31■□□□□ 0.2
CCDC40-206ENST00000572083 ZNF826PQ6ZT77 177 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 MRPL21Q7Z2W9 205 aaKnown RBP16.31■□□□□ 0.2
CCDC40-206ENST00000572083 GALNT4Q8N4A0 578 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 LZICQ8WZA0 190 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 FAM46AQ96IP4 442 aaKnown RBP16.31■□□□□ 0.2
CCDC40-206ENST00000572083 PPA2Q9H2U2 334 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 CNTD2Q9H8S5 307 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 DUX4Q9UBX2 424 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 FOXJ3Q9UPW0 622 aa16.31■□□□□ 0.2
CCDC40-206ENST00000572083 CAB39Q9Y376 341 aaPredicted RBP16.31■□□□□ 0.2
CCDC40-206ENST00000572083 hCG_1807616A0A1W2PRN6 198 aa16.3■□□□□ 0.2
CCDC40-206ENST00000572083 NDUFB2O95178 105 aa16.3■□□□□ 0.2
CCDC40-206ENST00000572083 PTBP3O95758 552 aaKnown RBP16.3■□□□□ 0.2
CCDC40-206ENST00000572083 ECDO95905 644 aaPredicted RBP16.3■□□□□ 0.2
CCDC40-206ENST00000572083 ELF3P78545 371 aaPredicted RBP16.3■□□□□ 0.2
CCDC40-206ENST00000572083 KLRD1Q13241 179 aa16.3■□□□□ 0.2
CCDC40-206ENST00000572083 GPR139Q6DWJ6 353 aa16.3■□□□□ 0.2
CCDC40-206ENST00000572083 ADCK1Q86TW2 530 aa16.3■□□□□ 0.2
CCDC40-206ENST00000572083 GCSAMQ8N6F7 178 aa16.3■□□□□ 0.2
CCDC40-206ENST00000572083 PITX2Q99697 317 aa16.3■□□□□ 0.2
CCDC40-206ENST00000572083 ATF6BQ99941 703 aa16.3■□□□□ 0.2
CCDC40-206ENST00000572083 NRIP3Q9NQ35 241 aa16.3■□□□□ 0.2
CCDC40-206ENST00000572083 IER3IP1Q9Y5U9 82 aa16.3■□□□□ 0.2
CCDC40-206ENST00000572083 A6NLC8 198 aa16.29■□□□□ 0.2
CCDC40-206ENST00000572083 FAM220BPB1ANY3 271 aa16.29■□□□□ 0.2
CCDC40-206ENST00000572083 GRPP07492 148 aa16.29■□□□□ 0.2
CCDC40-206ENST00000572083 CDKN2AP42771 156 aaKnown RBP16.29■□□□□ 0.2
CCDC40-206ENST00000572083 TRAP1Q12931 704 aaKnown RBP16.29■□□□□ 0.2
CCDC40-206ENST00000572083 PGM2L1Q6PCE3 622 aa16.29■□□□□ 0.2
CCDC40-206ENST00000572083 C1orf122Q6ZSJ8 110 aa16.29■□□□□ 0.2
CCDC40-206ENST00000572083 DYDC1Q8WWB3 177 aa16.29■□□□□ 0.2
CCDC40-206ENST00000572083 STON2Q8WXE9 905 aa16.29■□□□□ 0.2
CCDC40-206ENST00000572083 SLC22A4Q9H015 551 aa16.29■□□□□ 0.2
CCDC40-206ENST00000572083 FBLN5Q9UBX5 448 aa16.29■□□□□ 0.2
CCDC40-206ENST00000572083 SIGLEC7Q9Y286 467 aa16.29■□□□□ 0.2
CCDC40-206ENST00000572083 NOP16Q9Y3C1 178 aaKnown RBP16.29■□□□□ 0.2
CCDC40-206ENST00000572083 IGLV1-36A0A0B4J1U3 117 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 CD300LBA8K4G0 201 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 RNASEK-C17orf49H0YIS7 233 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 NPFFO15130 113 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 GPR37O15354 613 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 GMDSO60547 372 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 PPP1R3DO95685 299 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 ANOS1P23352 680 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 MDH1P40925 334 aaKnown RBP16.28■□□□□ 0.2
CCDC40-206ENST00000572083 LOXL3P58215 753 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 OXLD1Q5BKU9 147 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 SLC18B1Q6NT16 456 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 DNM1P34Q6PK57 102 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 RRM2BQ7LG56 351 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 PNKDQ8N490 385 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 PLPP7Q8NBV4 271 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 OR2T12Q8NG77 320 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 OR2AE1Q8NHA4 323 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 NPRL2Q8WTW4 380 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 GPX7Q96SL4 187 aaPredicted RBP16.28■□□□□ 0.2
CCDC40-206ENST00000572083 AURKCQ9UQB9 309 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 TMEM5Q9Y2B1 443 aa16.28■□□□□ 0.2
CCDC40-206ENST00000572083 MRASO14807 208 aa16.27■□□□□ 0.2
CCDC40-206ENST00000572083 PTP4A3O75365 173 aa16.27■□□□□ 0.2
CCDC40-206ENST00000572083 PAHP00439 452 aa16.27■□□□□ 0.2
CCDC40-206ENST00000572083 EEF1B2P24534 225 aaKnown RBP16.27■□□□□ 0.2
CCDC40-206ENST00000572083 CRABP1P29762 137 aa16.27■□□□□ 0.2
CCDC40-206ENST00000572083 FXYD6P3P58550 94 aa16.27■□□□□ 0.2
CCDC40-206ENST00000572083 ZNF92Q03936 586 aa16.27■□□□□ 0.2
CCDC40-206ENST00000572083 SNAI3Q3KNW1 292 aa16.27■□□□□ 0.2
CCDC40-206ENST00000572083 METAP1DQ6UB28 335 aaPredicted RBP16.27■□□□□ 0.2
CCDC40-206ENST00000572083 LYG1Q8N1E2 194 aa16.27■□□□□ 0.2
CCDC40-206ENST00000572083 LNX2Q8N448 690 aa16.27■□□□□ 0.2
CCDC40-206ENST00000572083 LY6G5BQ8NDX9 201 aa16.27■□□□□ 0.2
CCDC40-206ENST00000572083 OR5R1Q8NH85 324 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms