RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 AADACL4Q5VUY2 407 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 DEGS2Q6QHC5 323 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 PEG10Q86TG7 708 aaKnown RBP11.05□□□□□ -0.64
CLK3-224ENST00000568605 OR5AS1Q8N127 324 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 FTMTQ8N4E7 242 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 MAPK1IP1LQ8NDC0 245 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 BHLHE23Q8NDY6 225 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 GTF3AQ92664 365 aaKnown RBP11.05□□□□□ -0.64
CLK3-224ENST00000568605 AMELYQ99218 206 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 OR10A2Q9H208 303 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 RGCCQ9H4X1 137 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 ZNF275Q9NSD4 429 aaPredicted RBP11.05□□□□□ -0.64
CLK3-224ENST00000568605 HAO2Q9NYQ3 351 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 DNAJC27Q9NZQ0 273 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 IL19Q9UHD0 177 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.05□□□□□ -0.64
CLK3-224ENST00000568605 LRP12Q9Y561 859 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 N6AMT1Q9Y5N5 214 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 GMPPBQ9Y5P6 360 aa11.05□□□□□ -0.64
CLK3-224ENST00000568605 A0A096LNT2 108 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 GGT3PA6NGU5 568 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 ZNF670-ZNF695F2Z2N8 137 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 PPIHO43447 177 aaKnown RBP11.04□□□□□ -0.64
CLK3-224ENST00000568605 MPZL2O60487 215 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 CDC14BO60729 498 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 ZNF254O75437 659 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 LY6G6DO95868 133 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 SLC2A1P11166 492 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 ALOX5APP20292 161 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 HTR1FP30939 366 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 ATP6V1E1P36543 226 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 POLR2IP36954 125 aaKnown RBP11.04□□□□□ -0.64
CLK3-224ENST00000568605 SRP9P49458 86 aaKnown RBP11.04□□□□□ -0.64
CLK3-224ENST00000568605 GZMKP49863 264 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 EFNB1P98172 346 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 RCN1Q15293 331 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 TRIP10Q15642 601 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 TMEM249Q2WGJ8 235 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 ZNF829Q3KNS6 432 aaPredicted RBP11.04□□□□□ -0.64
CLK3-224ENST00000568605 ZIK1Q3SY52 487 aaPredicted RBP11.04□□□□□ -0.64
CLK3-224ENST00000568605 GLYATL3Q5SZD4 288 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 MEDAGQ5VYS4 303 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 LRRN1Q6UXK5 716 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 FAM57BQ71RH2 274 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 NAA40Q86UY6 237 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 SLC35F2Q8IXU6 374 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 ZNF555Q8NEP9 628 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 OR51G2Q8NGK0 314 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 OR2AE1Q8NHA4 323 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 PGAM5Q96HS1 289 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 SMR3AQ99954 134 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 ADGRL4Q9HBW9 690 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 TMEM100Q9NV29 134 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 SMPD3Q9NY59 655 aaPredicted RBP11.04□□□□□ -0.64
CLK3-224ENST00000568605 ZNF391Q9UJN7 358 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 IKZF2Q9UKS7 526 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 CSPG4Q6UVK1 2322 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 C2CD3Q4AC94 2353 aa11.04□□□□□ -0.64
CLK3-224ENST00000568605 LYNX1G3V0Z9 82 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 IFNL4K9M1U5 179 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 CD5LO43866 347 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 RP2O75695 350 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 TACSTD2P09758 323 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 SBK2P0C263 348 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 LYNX1P0DP58 116 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 ANPEPP15144 967 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 DCTDP32321 178 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 DDOSTP39656 456 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 RIDAP52758 137 aaKnown RBP11.03□□□□□ -0.64
CLK3-224ENST00000568605 MZT1Q08AG7 82 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 ZNF679Q8IYX0 411 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 OR10AD1Q8NGE0 317 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 HPS1Q92902 700 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 RAB1CQ92928 201 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 YIPF5Q969M3 257 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 REEP6Q96HR9 211 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 OR2V2Q96R30 315 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 OR8B4Q96RC9 309 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 SLC30A2Q9BRI3 323 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 ADAT1Q9BUB4 502 aaKnown RBP11.03□□□□□ -0.64
CLK3-224ENST00000568605 VCXQ9H320 206 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 GSX1Q9H4S2 264 aaPredicted RBP11.03□□□□□ -0.64
CLK3-224ENST00000568605 MOB1AQ9H8S9 216 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 BRD7Q9NPI1 651 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 CLN6Q9NWW5 311 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 MRPL15Q9P015 296 aaKnown RBP11.03□□□□□ -0.64
CLK3-224ENST00000568605 KLHDC2Q9Y2U9 406 aa11.03□□□□□ -0.64
CLK3-224ENST00000568605 IGHV4-61A0A0C4DH41 118 aa11.02□□□□□ -0.65
CLK3-224ENST00000568605 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.02□□□□□ -0.65
CLK3-224ENST00000568605 ERICH4A6NGS2 130 aa11.02□□□□□ -0.65
CLK3-224ENST00000568605 ACOD1A6NK06 481 aa11.02□□□□□ -0.65
CLK3-224ENST00000568605 ANKRD30BLA7E2S9 258 aa11.02□□□□□ -0.65
CLK3-224ENST00000568605 CD300LBA8K4G0 201 aa11.02□□□□□ -0.65
CLK3-224ENST00000568605 COL8A2P25067 703 aa11.02□□□□□ -0.65
CLK3-224ENST00000568605 CXCR4P61073 352 aa11.02□□□□□ -0.65
CLK3-224ENST00000568605 SNRPGP62308 76 aaKnown RBP11.02□□□□□ -0.65
CLK3-224ENST00000568605 ACTC1P68032 377 aa11.02□□□□□ -0.65
CLK3-224ENST00000568605 ACTA1P68133 377 aa11.02□□□□□ -0.65
CLK3-224ENST00000568605 ROM1Q03395 351 aa11.02□□□□□ -0.65
CLK3-224ENST00000568605 ZNF92Q03936 586 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms