RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TIMD4Q96H15 378 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 PLEKHA8Q96JA3 519 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 TEX12Q9BXU0 123 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 SHARPINQ9H0F6 387 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 LPAR2Q9HBW0 351 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 GCM1Q9NP62 436 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 KRT84Q9NSB2 600 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 TMEM106BQ9NUM4 274 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 TMEM100Q9NV29 134 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 IGHV3-64DA0A0J9YX35 117 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 CD300LBA8K4G0 201 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 F5H5P2 479 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 PRODHO43272 600 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 PRKYO43930 277 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 FCGR1AP12314 374 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 OPRL1P41146 370 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 SLC15A1P46059 708 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 HCCSP53701 268 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 ACTR3P61158 418 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 EFNB1P98172 346 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 SLC3A1Q07837 685 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 APOFQ13790 326 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 CR1LQ2VPA4 569 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 ZNF771Q7L3S4 317 aaPredicted RBP12.68□□□□□ -0.38
VPS39-210ENST00000568357 SHFQ7M4L6 423 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 PRSS45Q7RTY3 260 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 MRPL21Q7Z2W9 205 aaKnown RBP12.68□□□□□ -0.38
VPS39-210ENST00000568357 OTOSQ8NHW6 89 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 PYDC1Q8WXC3 89 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 CENPNQ96H22 339 aaPredicted RBP12.68□□□□□ -0.38
VPS39-210ENST00000568357 MEGF10Q96KG7 1140 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 SIGLEC11Q96RL6 698 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 TEAD3Q99594 435 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 GABARAPL1Q9H0R8 117 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 ZNF665Q9H7R5 613 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 TMEFF2Q9UIK5 374 aaPredicted RBP12.68□□□□□ -0.38
VPS39-210ENST00000568357 PPP1R3CQ9UQK1 317 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 KLHDC2Q9Y2U9 406 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 NPTNQ9Y639 398 aa12.68□□□□□ -0.38
VPS39-210ENST00000568357 M0R129 80 aa12.67□□□□□ -0.38
VPS39-210ENST00000568357 IGHV2-5P01817 119 aa12.67□□□□□ -0.38
VPS39-210ENST00000568357 SBK2P0C263 348 aa12.67□□□□□ -0.38
VPS39-210ENST00000568357 FAM157CP0CG43 387 aa12.67□□□□□ -0.38
VPS39-210ENST00000568357 PMELP40967 661 aa12.67□□□□□ -0.38
VPS39-210ENST00000568357 NAA10P41227 235 aaPredicted RBP12.67□□□□□ -0.38
VPS39-210ENST00000568357 CX3CR1P49238 355 aa12.67□□□□□ -0.38
VPS39-210ENST00000568357 DVL1P1P54792 670 aaPredicted RBP12.67□□□□□ -0.38
VPS39-210ENST00000568357 RPS7P62081 194 aaKnown RBP12.67□□□□□ -0.38
VPS39-210ENST00000568357 GRB2P62993 217 aaKnown RBP12.67□□□□□ -0.38
VPS39-210ENST00000568357 MAB21L1Q13394 359 aa12.67□□□□□ -0.38
VPS39-210ENST00000568357 KPNB1Q14974 876 aaKnown RBP12.67□□□□□ -0.38
VPS39-210ENST00000568357 SLC35D3Q5M8T2 416 aa12.67□□□□□ -0.38
VPS39-210ENST00000568357 RHOUQ7L0Q8 258 aa12.67□□□□□ -0.38
VPS39-210ENST00000568357 BCDIN3DQ7Z5W3 292 aaKnown RBP12.67□□□□□ -0.38
VPS39-210ENST00000568357 ZNF420Q8TAQ5 688 aaPredicted RBP12.67□□□□□ -0.38
VPS39-210ENST00000568357 THEM6Q8WUY1 208 aa12.67□□□□□ -0.38
VPS39-210ENST00000568357 SPRYD4Q8WW59 207 aaPredicted RBP12.67□□□□□ -0.38
VPS39-210ENST00000568357 SGK3Q96BR1 496 aa12.67□□□□□ -0.38
VPS39-210ENST00000568357 ZNF319Q9P2F9 582 aa12.67□□□□□ -0.38
VPS39-210ENST00000568357 LPAR3Q9UBY5 353 aa12.67□□□□□ -0.38
VPS39-210ENST00000568357 OAZ3Q9UMX2 235 aa12.67□□□□□ -0.38
VPS39-210ENST00000568357 MALRD1Q5VYJ5 2156 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 ISPDA4D126 451 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 CCDC182A6NF36 153 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 ZAR1LA6NP61 321 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 H3BNX3 289 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 TMEM178BH3BS89 294 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 IFNA2P01563 188 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 IGHV2-70P01814 119 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 MSMBP08118 114 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 CA6P23280 308 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 POLR2IP36954 125 aaKnown RBP12.66□□□□□ -0.38
VPS39-210ENST00000568357 SRP9P49458 86 aaKnown RBP12.66□□□□□ -0.38
VPS39-210ENST00000568357 ZNF121P58317 390 aaPredicted RBP12.66□□□□□ -0.38
VPS39-210ENST00000568357 SLX4IPQ5VYV7 408 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 C12orf73Q69YU5 71 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 PEG10Q86TG7 708 aaKnown RBP12.66□□□□□ -0.38
VPS39-210ENST00000568357 ZNF454Q8N9F8 522 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 SPSB4Q96A44 273 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 TMEM186Q96B77 213 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 CIB1Q99828 191 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 PKP2Q99959 881 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 TOR3AQ9H497 397 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 HIF1ANQ9NWT6 349 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 DNAJC27Q9NZQ0 273 aa12.66□□□□□ -0.38
VPS39-210ENST00000568357 GGT3PA6NGU5 568 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 SAC3D1A6NKF1 404 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 EBAG9O00559 213 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 TBX1O43435 398 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 PLPP2O43688 288 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 ANXA2P07355 339 aaKnown RBP12.65□□□□□ -0.38
VPS39-210ENST00000568357 LYNP07948 512 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 H2BFMP0C1H6 154 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 ALOX5APP20292 161 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 HSD11B1P28845 292 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 MMP16P51512 607 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 ZMYND11Q15326 602 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 KRTAP24-1Q3LI83 254 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 FAM57BQ71RH2 274 aa12.65□□□□□ -0.38
VPS39-210ENST00000568357 SLC16A9Q7RTY1 509 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms