RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ACTG1P63261 375 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 CDCP2Q5VXM1 449 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 NLRC3Q7RTR2 1065 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 SLC36A1Q7Z2H8 476 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 LRRC18Q8N456 261 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 LILRB4Q8NHJ6 448 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 GRPEL2Q8TAA5 225 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 FAM46BQ96A09 425 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 LIN37Q96GY3 246 aaPredicted RBP17.86■□□□□ 0.45
CLN3-230ENST00000568076 LOXL4Q96JB6 756 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 SPACA5Q96QH8 159 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 RBM24Q9BX46 236 aaKnown RBP17.86■□□□□ 0.45
CLN3-230ENST00000568076 SCPEP1Q9HB40 452 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 RYDENQ9NUL5 291 aaKnown RBP17.86■□□□□ 0.45
CLN3-230ENST00000568076 NCOA6Q14686 2063 aaPredicted RBP17.86■□□□□ 0.45
CLN3-230ENST00000568076 OR5H15A6NDH6 313 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 TMEM235A6NFC5 223 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 BPNT1O95861 308 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 GUCA1AP43080 201 aaPredicted RBP17.86■□□□□ 0.45
CLN3-230ENST00000568076 CAPZA1P52907 286 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 RSPO1Q2MKA7 263 aaPredicted RBP17.86■□□□□ 0.45
CLN3-230ENST00000568076 GFOD2Q3B7J2 385 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 NAXDQ8IW45 347 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 C20orf196Q8IYI0 205 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 OR52B4Q8NGK2 314 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 CMBLQ96DG6 245 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 CA10Q9NS85 328 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 ZNF69Q9UC07 566 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 CPN1P15169 458 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 ZNF93P35789 620 aaPredicted RBP17.85■□□□□ 0.45
CLN3-230ENST00000568076 CYB561P49447 251 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 STARP49675 285 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 HIST1H3AP68431 136 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 ZNF260Q3ZCT1 412 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 CCDC92Q53HC0 331 aaPredicted RBP17.85■□□□□ 0.45
CLN3-230ENST00000568076 WIPI1Q5MNZ9 446 aaPredicted RBP17.85■□□□□ 0.45
CLN3-230ENST00000568076 HIST2H3PS2Q5TEC6 136 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 HIST2H3AQ71DI3 136 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 GALNT16Q8N428 558 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 TMEM229BQ8NBD8 167 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 GJC3Q8NFK1 279 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 KCNE4Q8WWG9 221 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 AQP3Q92482 292 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 ADGRG7Q96K78 797 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 LYZL4Q96KX0 146 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 SF3B5Q9BWJ5 86 aaKnown RBP17.85■□□□□ 0.45
CLN3-230ENST00000568076 ULBP2Q9BZM5 246 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 SCP2D1Q9UJQ7 156 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 KLK13Q9UKR3 277 aa17.85■□□□□ 0.45
CLN3-230ENST00000568076 DNPH1O43598 174 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 CREBL2O60519 120 aaPredicted RBP17.84■□□□□ 0.45
CLN3-230ENST00000568076 TAS2R19P59542 299 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 DOK3Q7L591 496 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 ANGPTL5Q86XS5 388 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 DTX1Q86Y01 620 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 OR14K1Q8NGZ2 314 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 PTTG3PQ9NZH4 202 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 R4GN57 208 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 NCOR1O75376 2440 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 SNRPGP15A8MWD9 76 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 IGLV3-1P01715 115 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 CLDN15P56746 228 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 CARD18P57730 90 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 OC90Q02509 493 aaPredicted RBP17.84■□□□□ 0.45
CLN3-230ENST00000568076 INTS12Q96CB8 462 aaKnown RBP17.84■□□□□ 0.45
CLN3-230ENST00000568076 THOC3Q96J01 351 aaKnown RBP17.84■□□□□ 0.45
CLN3-230ENST00000568076 SFXN2Q96NB2 322 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 MGAT4CQ9UBM8 478 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 FLVCR1Q9Y5Y0 555 aa17.84■□□□□ 0.45
CLN3-230ENST00000568076 METTL21EPA6NDL7 271 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 ZNF716A6NP11 495 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 TMEM14DPA8MWL7 114 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 F5H5K5 113 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 M0QYG6 137 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 CXCL13O43927 109 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 DNASE1P24855 282 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 FOXO1Q12778 655 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 AWAT2Q6E213 333 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 SPINK14Q6IE38 97 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 RTN4RL2Q86UN3 420 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 SPICQ8N5J4 248 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 MEIOBQ8N635 442 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 OR2T35Q8NGX2 323 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 ROBO4Q8WZ75 1007 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 FBXO17Q96EF6 278 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 GPR137Q96N19 417 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 TINAGL1Q9GZM7 467 aaPredicted RBP17.83■□□□□ 0.44
CLN3-230ENST00000568076 SLCO5A1Q9H2Y9 848 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 GPN1Q9HCN4 374 aaPredicted RBP17.83■□□□□ 0.44
CLN3-230ENST00000568076 PIPOXQ9P0Z9 390 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 SLC23A1Q9UHI7 598 aa17.83■□□□□ 0.44
CLN3-230ENST00000568076 IGKV1-9A0A0C4DH69 117 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 TERTO14746 1132 aaKnown RBP17.82■□□□□ 0.44
CLN3-230ENST00000568076 TRAPPC6AO75865 159 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 RAB3DO95716 219 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 RLN1P04808 185 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 ERCC1P07992 297 aaPredicted RBP17.82■□□□□ 0.44
CLN3-230ENST00000568076 S100A1P23297 94 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 DLSTP36957 453 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 RAB12Q6IQ22 244 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms