RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 RPSAP08865 295 aaKnown RBP17.77■□□□□ 0.44
CLN3-212ENST00000564574 CFL1P23528 166 aaKnown RBP17.77■□□□□ 0.44
CLN3-212ENST00000564574 CDK5R1Q15078 307 aa17.77■□□□□ 0.44
CLN3-212ENST00000564574 WDR38Q5JTN6 314 aa17.77■□□□□ 0.44
CLN3-212ENST00000564574 UBE2UQ5VVX9 321 aa17.77■□□□□ 0.44
CLN3-212ENST00000564574 RGS7BPQ6MZT1 257 aaPredicted RBP17.77■□□□□ 0.44
CLN3-212ENST00000564574 ZNF704Q6ZNC4 412 aaPredicted RBP17.77■□□□□ 0.44
CLN3-212ENST00000564574 KBTBD8Q8NFY9 601 aa17.77■□□□□ 0.44
CLN3-212ENST00000564574 ITFG2Q969R8 447 aa17.77■□□□□ 0.44
CLN3-212ENST00000564574 OR51B6Q9H340 312 aa17.77■□□□□ 0.44
CLN3-212ENST00000564574 ST6GALNAC2Q9UJ37 374 aa17.77■□□□□ 0.44
CLN3-212ENST00000564574 ATE1O95260 518 aa17.76■□□□□ 0.43
CLN3-212ENST00000564574 TTRP02766 147 aa17.76■□□□□ 0.43
CLN3-212ENST00000564574 CD1AP06126 327 aa17.76■□□□□ 0.43
CLN3-212ENST00000564574 UBCP0CG48 685 aaKnown RBP17.76■□□□□ 0.43
CLN3-212ENST00000564574 NANOS3P60323 173 aaKnown RBP17.76■□□□□ 0.43
CLN3-212ENST00000564574 MLLT11Q13015 90 aaPredicted RBP17.76■□□□□ 0.43
CLN3-212ENST00000564574 TIGD6Q17RP2 521 aa17.76■□□□□ 0.43
CLN3-212ENST00000564574 KCTD8Q6ZWB6 473 aa17.76■□□□□ 0.43
CLN3-212ENST00000564574 PRSS35Q8N3Z0 413 aa17.76■□□□□ 0.43
CLN3-212ENST00000564574 SLC25A40Q8TBP6 338 aa17.76■□□□□ 0.43
CLN3-212ENST00000564574 RPS4Y2Q8TD47 263 aa17.76■□□□□ 0.43
CLN3-212ENST00000564574 AKAP1Q92667 903 aaKnown RBP eCLIP17.76■□□□□ 0.43
CLN3-212ENST00000564574 SPSB4Q96A44 273 aa17.76■□□□□ 0.43
CLN3-212ENST00000564574 FRRS1LQ9P0K9 344 aa17.76■□□□□ 0.43
CLN3-212ENST00000564574 ZNF319Q9P2F9 582 aa17.76■□□□□ 0.43
CLN3-212ENST00000564574 SLC22A13Q9Y226 551 aa17.76■□□□□ 0.43
CLN3-212ENST00000564574 TRBV2A0A0J9YWF9 115 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 TMEM212A6NML5 194 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 OR4C45A6NMZ5 311 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 PLAUP00749 431 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 IGLV3-1P01715 115 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 KIR3DL2P43630 455 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 GTF2A1P52655 376 aaPredicted RBP17.75■□□□□ 0.43
CLN3-212ENST00000564574 ZNF718Q3SXZ3 478 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 ZNF672Q499Z4 452 aaPredicted RBP17.75■□□□□ 0.43
CLN3-212ENST00000564574 GLYATL3Q5SZD4 288 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 TMEM244Q5VVB8 128 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 FBXW12Q6X9E4 464 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 CCDC54Q8NEL0 328 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 TMEM171Q8WVE6 324 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 SGK3Q96BR1 496 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 SMIM19Q96E16 107 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 MARS2Q96GW9 593 aaKnown RBP17.75■□□□□ 0.43
CLN3-212ENST00000564574 MGLLQ99685 303 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 MRPS26Q9BYN8 205 aaKnown RBP17.75■□□□□ 0.43
CLN3-212ENST00000564574 COMMD4Q9H0A8 199 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 CA10Q9NS85 328 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 PTTG3PQ9NZH4 202 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 NAV2Q8IVL1 2488 aa17.75■□□□□ 0.43
CLN3-212ENST00000564574 PKDREJQ9NTG1 2253 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 PLPP2O43688 288 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 GPRIN2O60269 458 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 ISG15P05161 165 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 SMIM18P0DKX4 95 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 ATP6V1B1P15313 513 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 GCH1P30793 250 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 THBS4P35443 961 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 GPR50Q13585 617 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 MBNL2Q5VZF2 373 aaKnown RBP17.74■□□□□ 0.43
CLN3-212ENST00000564574 DMKNQ6E0U4 476 aaPredicted RBP17.74■□□□□ 0.43
CLN3-212ENST00000564574 XAF1Q6GPH4 301 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 UFD1Q92890 307 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 C14orf79Q96F83 325 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 REEP6Q96HR9 211 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 OR2J1Q9GZK6 312 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 POFUT1Q9H488 388 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 CISD1Q9NZ45 108 aaKnown RBP17.74■□□□□ 0.43
CLN3-212ENST00000564574 CMAHPQ9Y471 501 aa17.74■□□□□ 0.43
CLN3-212ENST00000564574 SPTAN1Q13813 2472 aaKnown RBP17.74■□□□□ 0.43
CLN3-212ENST00000564574 C5orf63A6NC05 138 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 E7EQL1 145 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 CTAG2O75638 210 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 HSMCR30P0CW71 290 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 RAC2P15153 192 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 ZNF250P15622 560 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 ANOS1P23352 680 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 ERVS71-1P61550 626 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 ZNF92Q03936 586 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 TLE4Q04727 773 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 TPBGQ13641 420 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 DOC2BQ14184 412 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 GK2Q14410 553 aaPredicted RBP17.73■□□□□ 0.43
CLN3-212ENST00000564574 PGAP1Q75T13 922 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 MRPL21Q7Z2W9 205 aaKnown RBP17.73■□□□□ 0.43
CLN3-212ENST00000564574 ZNF676Q8N7Q3 588 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 OR5AK2Q8NH90 309 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 OR2AE1Q8NHA4 323 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 LILRB1Q8NHL6 650 aaPredicted RBP17.73■□□□□ 0.43
CLN3-212ENST00000564574 PPP1R14AQ96A00 147 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 OPALINQ96PE5 141 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 DHRS9Q9BPW9 319 aa17.73■□□□□ 0.43
CLN3-212ENST00000564574 REPIN1Q9BWE0 567 aaKnown RBP17.73■□□□□ 0.43
CLN3-212ENST00000564574 SIRT4Q9Y6E7 314 aaPredicted RBP17.73■□□□□ 0.43
CLN3-212ENST00000564574 A0A1B0GVI7 797 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 LOC390937A0A1W2PQ73 354 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 SELEP16581 610 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 ZNF12P17014 697 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 JUNBP17275 347 aaPredicted RBP17.72■□□□□ 0.43
CLN3-212ENST00000564574 CD53P19397 219 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms