RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 CACNA1DQ01668 2161 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 PCNX1Q96RV3 2341 aa7.83□□□□□ -1.16
VPS39-207ENST00000563692 A0A0G2JK05 382 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 P2RY10O00398 339 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 MAS1P04201 325 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 ERCC1P07992 297 aaPredicted RBP7.82□□□□□ -1.16
VPS39-207ENST00000563692 ACSM4P0C7M7 580 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 SLC2A2P11168 524 aaPredicted RBP7.82□□□□□ -1.16
VPS39-207ENST00000563692 ZNF20P17024 532 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 GRNP28799 593 aaKnown RBP7.82□□□□□ -1.16
VPS39-207ENST00000563692 CHRNB4P30926 498 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 MAGEB1P43366 347 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 CAPZA1P52907 286 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 SCAND1P57086 179 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 ZNF121P58317 390 aaPredicted RBP7.82□□□□□ -1.16
VPS39-207ENST00000563692 SCN1BQ07699 218 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 IL18Q14116 193 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 RAB35Q15286 201 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 TRIM16LQ309B1 348 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 SLC25A35Q3KQZ1 300 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 SLC36A2Q495M3 483 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 CCDC92Q53HC0 331 aaPredicted RBP7.82□□□□□ -1.16
VPS39-207ENST00000563692 OR2A2Q6IF42 318 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 ZNF585AQ6P3V2 769 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 CNIH2Q6PI25 160 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 DRAM2Q6UX65 266 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 BAIAP2L2Q6UXY1 529 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 ZNF813Q6ZN06 617 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 DOK3Q7L591 496 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 BTLAQ7Z6A9 289 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 FGD2Q7Z6J4 655 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 DPPA2Q7Z7J5 298 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 LRRTM1Q86UE6 522 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 NR2C2APQ86WQ0 139 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 COMMD2Q86X83 199 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 OR51A4Q8NGJ6 313 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 OR5M9Q8NGP3 310 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 OR1F12Q8NHA8 337 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 CHPT1Q8WUD6 406 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 C15orf40Q8WUR7 153 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 FBXO17Q96EF6 278 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 S100A16Q96FQ6 103 aaKnown RBP7.82□□□□□ -1.16
VPS39-207ENST00000563692 GMPPAQ96IJ6 420 aaPredicted RBP7.82□□□□□ -1.16
VPS39-207ENST00000563692 COX4I2Q96KJ9 171 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 RNF121Q9H920 327 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 PNRC2Q9NPJ4 139 aaKnown RBP7.82□□□□□ -1.16
VPS39-207ENST00000563692 CYSLTR2Q9NS75 346 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 SLC7A10Q9NS82 523 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 ZNF275Q9NSD4 429 aaPredicted RBP7.82□□□□□ -1.16
VPS39-207ENST00000563692 EXTL2Q9UBQ6 330 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 CLEC4AQ9UMR7 237 aa7.82□□□□□ -1.16
VPS39-207ENST00000563692 LOC107986453A0A1B0GWG9 222 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 OR6C6A6NF89 314 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 F5H5K5 113 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 H3BSH0 61 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 MAGEB3O15480 346 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 WDR1O75083 606 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 MTRF1O75570 445 aaKnown RBP7.81□□□□□ -1.16
VPS39-207ENST00000563692 WNT11O96014 354 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 TTRP02766 147 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 HOXD4P09016 255 aaPredicted RBP7.81□□□□□ -1.16
VPS39-207ENST00000563692 OCMP0CE72 109 aaPredicted RBP7.81□□□□□ -1.16
VPS39-207ENST00000563692 GABRA1P14867 456 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 B4GALT1P15291 398 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 ATF1P18846 271 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 ELK1P19419 428 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 FSTP19883 344 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 THBS2P35442 1172 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 ARR3P36575 388 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 GNALP38405 381 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 NR4A2P43354 598 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 SLC6A9P48067 706 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 PITPNBP48739 271 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 INPP1P49441 399 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 ARF1P84077 181 aaKnown RBP7.81□□□□□ -1.16
VPS39-207ENST00000563692 PMPCAQ10713 525 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 FAPQ12884 760 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 UBE2NLQ5JXB2 153 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 HES5Q5TA89 166 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 PYHIN1Q6K0P9 492 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 NCCRP1Q6ZVX7 275 aaPredicted RBP7.81□□□□□ -1.16
VPS39-207ENST00000563692 FAM57BQ71RH2 274 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 PGAP1Q75T13 922 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 LYSMD2Q8IV50 215 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 SKA3Q8IX90 412 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 NKAIN3Q8N8D7 197 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 POC5Q8NA72 575 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 C19orf18Q8NEA5 215 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 OR52H1Q8NGJ2 320 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 OR10AC1Q8NH08 325 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 SETD6Q8TBK2 473 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 OR51E1Q8TCB6 317 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 WNT2BQ93097 391 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 FGGYQ96C11 551 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 ZNF837Q96EG3 531 aaPredicted RBP7.81□□□□□ -1.16
VPS39-207ENST00000563692 ALKBH3Q96Q83 286 aaPredicted RBP7.81□□□□□ -1.16
VPS39-207ENST00000563692 TRIB1Q96RU8 372 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 SOSTQ9BQB4 213 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 SRRQ9GZT4 340 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 OR10A2Q9H208 303 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms