RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 CYB5R3P00387 301 aaPredicted RBP13.19□□□□□ -0.3
VPS39-203ENST00000561797 HMGN1P05114 100 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 MMP16P51512 607 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 BTG1P62324 171 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 ZMYND11Q15326 602 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 KLHL12Q53G59 568 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 SHQ1Q6PI26 577 aaKnown RBP13.19□□□□□ -0.3
VPS39-203ENST00000561797 MOGAT3Q86VF5 341 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 LRRC28Q86X40 367 aaPredicted RBP13.19□□□□□ -0.3
VPS39-203ENST00000561797 CPOQ8IVL8 374 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 KLHL36Q8N4N3 616 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 TMEM158Q8WZ71 300 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 PLEKHA8Q96JA3 519 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 ABHD6Q9BV23 337 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 METTL17Q9H7H0 456 aaPredicted RBP13.19□□□□□ -0.3
VPS39-203ENST00000561797 G6PC2Q9NQR9 355 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 FBN1P35555 2871 aaKnown RBP13.18□□□□□ -0.3
VPS39-203ENST00000561797 CD300LBA8K4G0 201 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 PNPP00491 289 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 ANXA2P07355 339 aaKnown RBP13.18□□□□□ -0.3
VPS39-203ENST00000561797 CA6P23280 308 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 HSD11B1P28845 292 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 THBS2P35442 1172 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 SLC15A1P46059 708 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 CX3CR1P49238 355 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 GRB2P62993 217 aaKnown RBP13.18□□□□□ -0.3
VPS39-203ENST00000561797 OR8G1Q15617 311 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 DCAF12L2Q5VW00 463 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 SHFQ7M4L6 423 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 SPICQ8N5J4 248 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 UTP4Q969X6 686 aaKnown RBP13.18□□□□□ -0.3
VPS39-203ENST00000561797 NRBF2Q96F24 287 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 AMELYQ99218 206 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 REPIN1Q9BWE0 567 aaKnown RBP13.18□□□□□ -0.3
VPS39-203ENST00000561797 MARCH7Q9H992 704 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 PATZ1Q9HBE1 687 aaKnown RBP13.18□□□□□ -0.3
VPS39-203ENST00000561797 PAPOLBQ9NRJ5 636 aaKnown RBP13.18□□□□□ -0.3
VPS39-203ENST00000561797 DNAJC27Q9NZQ0 273 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 METRNQ9UJH8 293 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 CUBNO60494 3623 aa13.18□□□□□ -0.3
VPS39-203ENST00000561797 A0A0G2JMP0 313 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 A0A0X1KG70 313 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 IFNL4K9M1U5 179 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 SELENOFO60613 162 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 AVPP01185 164 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 ZFP36P26651 326 aaKnown RBP13.17□□□□□ -0.3
VPS39-203ENST00000561797 MDH2P40926 338 aaKnown RBP13.17□□□□□ -0.3
VPS39-203ENST00000561797 DAPP51397 102 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 CRISP1P54107 249 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 RAD23AP54725 363 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 RPS7P62081 194 aaKnown RBP13.17□□□□□ -0.3
VPS39-203ENST00000561797 MAB21L1Q13394 359 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 TMEM155Q4W5P6 130 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 C1orf146Q5VVC0 180 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 PRAMEF6Q5VXH4 476 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 PHC2Q8IXK0 858 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 TIGD4Q8IY51 512 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 BBS1Q8NFJ9 593 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 OR4M2Q8NGB6 313 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 OR5K1Q8NHB7 308 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 THEM6Q8WUY1 208 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 DVL3Q92997 716 aaPredicted RBP13.17□□□□□ -0.3
VPS39-203ENST00000561797 TEX12Q9BXU0 123 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 OCEL1Q9H607 264 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 SLC25A19Q9HC21 320 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 BRD7Q9NPI1 651 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 UFSP2Q9NUQ7 469 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 TVP23BQ9NYZ1 205 aa13.17□□□□□ -0.3
VPS39-203ENST00000561797 LOC105371242A0A075B767 164 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 A0A1B0GWJ7 208 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 FOXH1O75593 365 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 H2BFMP0C1H6 154 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 PMELP40967 661 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 NAA10P41227 235 aaPredicted RBP13.16□□□□□ -0.3
VPS39-203ENST00000561797 SEC61A1P61619 476 aaKnown RBP13.16□□□□□ -0.3
VPS39-203ENST00000561797 SNAPC1Q16533 368 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 KRTAP24-1Q3LI83 254 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 FAM201AQ5SY85 155 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 FAHD1Q6P587 224 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 C1orf229Q6ZS94 237 aaPredicted RBP13.16□□□□□ -0.3
VPS39-203ENST00000561797 FAM57BQ71RH2 274 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 OR56B2PQ8NGI1 322 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 SPATA3Q8NHX4 192 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 RNF133Q8WVZ7 376 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 ADAT1Q9BUB4 502 aaKnown RBP13.16□□□□□ -0.3
VPS39-203ENST00000561797 TMPRSS13Q9BYE2 586 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 TOR3AQ9H497 397 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 ATRQ13535 2644 aa13.16□□□□□ -0.3
VPS39-203ENST00000561797 LRRC30A6NM36 301 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 PRODHO43272 600 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 XRCC2O43543 280 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 MITFO75030 526 aaPredicted RBP13.15□□□□□ -0.3
VPS39-203ENST00000561797 LYNP07948 512 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 IRF2P14316 349 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 ADRA2CP18825 462 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 CD200P41217 278 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 ZNF121P58317 390 aaPredicted RBP13.15□□□□□ -0.3
VPS39-203ENST00000561797 APOFQ13790 326 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 MPPED2Q15777 294 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 ATP6AP1Q15904 470 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms