RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 OR2AJ1Q8NGZ0 328 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 ZNRF4Q8WWF5 429 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 CMTM5Q96DZ9 223 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 PYURFQ96I23 114 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 NUDT16L1Q9BRJ7 211 aaKnown RBP9.69□□□□□ -0.86
USP3-220ENST00000561381 ZNF696Q9H7X3 374 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 GORASP2Q9H8Y8 452 aa9.69□□□□□ -0.86
USP3-220ENST00000561381 ZMAT3Q9HA38 289 aaKnown RBP9.69□□□□□ -0.86
USP3-220ENST00000561381 TRRAPQ9Y4A5 3859 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 TVP23AA6NH52 213 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 HOXA3O43365 443 aaPredicted RBP9.68□□□□□ -0.86
USP3-220ENST00000561381 GMNNO75496 209 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 FSTL3O95633 263 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 IRF2P14316 349 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 MDKP21741 143 aaPredicted RBP9.68□□□□□ -0.86
USP3-220ENST00000561381 CA6P23280 308 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 RRM2P31350 389 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 CD200P41217 278 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 GSSP48637 474 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 SMIM11AP58511 58 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 FGF12P61328 243 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 IL13RA1P78552 427 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.68□□□□□ -0.86
USP3-220ENST00000561381 ECH1Q13011 328 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 DEFB112Q30KQ8 113 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 SNAI3Q3KNW1 292 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 SLC36A3Q495N2 470 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 RUSC1-AS1Q66K80 236 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 SFRP4Q6FHJ7 346 aaPredicted RBP9.68□□□□□ -0.86
USP3-220ENST00000561381 ZNF620Q6ZNG0 422 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 DCDC5Q6ZRR9 648 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 PGAP1Q75T13 922 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 BOLLQ8N9W6 283 aaKnown RBP9.68□□□□□ -0.86
USP3-220ENST00000561381 CYB561A3Q8NBI2 242 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 OR2AE1Q8NHA4 323 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 Q8TCH9 128 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 EGLN3Q9H6Z9 239 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 TNFRSF19Q9NS68 423 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 CTSZQ9UBR2 303 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 CLN8Q9UBY8 286 aa9.68□□□□□ -0.86
USP3-220ENST00000561381 CD300LBA8K4G0 201 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 M0R135 149 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 PHYHO14832 338 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 SFTPBP07988 381 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 PRDX6P30041 224 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 PSMB10P40306 273 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 ZNF92Q03936 586 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 MALLQ13021 153 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 OR8G1Q15617 311 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 HSP90B2PQ58FF3 399 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 PGBD2Q6P3X8 592 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 C16orf87Q6PH81 154 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 SPATC1Q76KD6 591 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 MRPL21Q7Z2W9 205 aaKnown RBP9.67□□□□□ -0.86
USP3-220ENST00000561381 CELF2-AS1Q8N7Q2 184 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 OR51L1Q8NGJ5 315 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 OR11L1Q8NGX0 322 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 GNPDA2Q8TDQ7 276 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 SPRYD4Q8WW59 207 aaPredicted RBP9.67□□□□□ -0.86
USP3-220ENST00000561381 TMIGD2Q96BF3 282 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 ZNF799Q96GE5 643 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 TECTBQ96PL2 329 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 DDOQ99489 341 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 FAM107BQ9H098 131 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 NSRP1Q9H0G5 558 aaKnown RBP9.67□□□□□ -0.86
USP3-220ENST00000561381 MMADHCQ9H3L0 296 aaPredicted RBP9.67□□□□□ -0.86
USP3-220ENST00000561381 CD300AQ9UGN4 299 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 MAGEL2Q9UJ55 1249 aa9.67□□□□□ -0.86
USP3-220ENST00000561381 ARPC2O15144 300 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 IDH3BO43837 385 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 FCN3O75636 299 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 FABP3P05413 133 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 HSD17B1P14061 328 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 CFHR2P36980 270 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 TPTEP56180 551 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 SRSF4Q08170 494 aaKnown RBP9.66□□□□□ -0.86
USP3-220ENST00000561381 TSPAN31Q12999 210 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 GLYATL3Q5SZD4 288 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 ZNF362Q5T0B9 420 aaPredicted RBP9.66□□□□□ -0.86
USP3-220ENST00000561381 ZNF826PQ6ZT77 177 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 PROKR2Q8NFJ6 384 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 OR9Q2Q8NGE9 314 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 ERGIC1Q969X5 290 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 MCUR1Q96AQ8 359 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 NSMCE2Q96MF7 247 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 PCGF1Q9BSM1 259 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 ADAT1Q9BUB4 502 aaKnown RBP9.66□□□□□ -0.86
USP3-220ENST00000561381 RASSF4Q9H2L5 321 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 MARCH7Q9H992 704 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 FN3KRPQ9HA64 309 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 SMURF1Q9HCE7 757 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 IL1RAPQ9NPH3 570 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 RNF7Q9UBF6 113 aa9.66□□□□□ -0.86
USP3-220ENST00000561381 GGT3PA6NGU5 568 aa9.65□□□□□ -0.86
USP3-220ENST00000561381 POM121CA8CG34 1229 aa9.65□□□□□ -0.86
USP3-220ENST00000561381 SRRM5B3KS81 715 aa9.65□□□□□ -0.86
USP3-220ENST00000561381 LGALS8O00214 317 aa9.65□□□□□ -0.86
USP3-220ENST00000561381 BHLHE40O14503 412 aa9.65□□□□□ -0.86
USP3-220ENST00000561381 TNFRSF13BO14836 293 aaPredicted RBP9.65□□□□□ -0.86
USP3-220ENST00000561381 ENSAO43768 121 aaKnown RBP9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms