RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 PTBP3O95758 552 aaKnown RBP9.74□□□□□ -0.85
USP3-206ENST00000558157 AIFM1O95831 613 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 TSPAN15O95858 294 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 SP9P0CG40 484 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 SOX2P48431 317 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 PPM1FP49593 454 aaPredicted RBP9.74□□□□□ -0.85
USP3-206ENST00000558157 SKP1P63208 163 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 FAM3AP98173 230 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 TOMM34Q15785 309 aaPredicted RBP9.74□□□□□ -0.85
USP3-206ENST00000558157 TMEM268Q5VZI3 342 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 MFSD12Q6NUT3 480 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 CDPF1Q6NVV7 123 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 NPSR1Q6W5P4 371 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 Q6ZRG5 221 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 SLC16A9Q7RTY1 509 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 OR10G6Q8NH81 332 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 PTX4Q96A99 478 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 SLC41A2Q96JW4 573 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 ZNF587Q96SQ5 575 aaPredicted RBP9.74□□□□□ -0.85
USP3-206ENST00000558157 NDUFAF3Q9BU61 184 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 TGIF2Q9GZN2 237 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 SPACA1Q9HBV2 294 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 RXFP3Q9NSD7 469 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 SUSD2Q9UGT4 822 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 LAMA1P25391 3075 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 FEZF1A0PJY2 475 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 UMAD1C9J7I0 102 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 LMO7DNF2Z398 122 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 H0YIZ8 118 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 DCTN6O00399 190 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 ARPC3O15145 178 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 SYT7O43581 403 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 SERPINA5P05154 406 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 PTNP21246 168 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 RPS10P46783 165 aaKnown RBP9.74□□□□□ -0.85
USP3-206ENST00000558157 PRDX1Q06830 199 aaKnown RBP9.74□□□□□ -0.85
USP3-206ENST00000558157 FHL1Q13642 323 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 GUK1Q16774 197 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 DPY19L2P2Q6ZN68 376 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 KCTD9Q7L273 389 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 HIST3H2BBQ8N257 126 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 ZNF619Q8N2I2 560 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 OR2L3Q8NG85 312 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 Q96M85 177 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 SLC35B3Q9H1N7 401 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 PTGES2Q9H7Z7 377 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 C19orf12Q9NSK7 152 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 A0A087WWC5 75 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 C13orf42A0A1B0GVH6 325 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 A0A1B0GW64 132 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 OR4C45A6NMZ5 311 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 ZNF724A8MTY0 619 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 H7C1Q1 480 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 AGPAT2O15120 278 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 SMAD9O15198 467 aaKnown RBP9.73□□□□□ -0.85
USP3-206ENST00000558157 TGOLN2O43493 480 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 STK17BO94768 372 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 ERCC1P07992 297 aaPredicted RBP9.73□□□□□ -0.85
USP3-206ENST00000558157 HCKP08631 526 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 OR8U9P0C7N5 309 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 TSFMP43897 325 aaKnown RBP9.73□□□□□ -0.85
USP3-206ENST00000558157 CASP6P55212 293 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 RPS23P62266 143 aaKnown RBP9.73□□□□□ -0.85
USP3-206ENST00000558157 CSNK1G2P78368 415 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 SHBQ15464 509 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 MESTQ5EB52 335 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.73□□□□□ -0.85
USP3-206ENST00000558157 ZNF793Q6ZN11 406 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 AMER3Q8N944 861 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 ZNF511Q8NB15 262 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 NPEPL1Q8NDH3 523 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 OR8U1Q8NH10 309 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 FLVCR1-AS1Q8TAF5 88 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 PBDC1Q9BVG4 233 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 OR2S2Q9NQN1 319 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 FAM212BQ9NTI7 297 aaPredicted RBP9.73□□□□□ -0.85
USP3-206ENST00000558157 FARSAQ9Y285 508 aaKnown RBP9.73□□□□□ -0.85
USP3-206ENST00000558157 ZNF780BQ9Y6R6 833 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 CACNA1EQ15878 2313 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 HEATR5BQ9P2D3 2071 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 A0A1W2PPE2 198 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 A0A1W2PR48 441 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 A8MWP6 167 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 ABHD16AO95870 558 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 ARG1P05089 322 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 SPARCP09486 303 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 VAMP1P23763 118 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 CRABP1P29762 137 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 CMPK1P30085 196 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 OR8G1Q15617 311 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 LPAL2Q16609 132 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 C14orf28Q4W4Y0 310 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 MRPL2Q5T653 305 aaKnown RBP9.73□□□□□ -0.85
USP3-206ENST00000558157 PEAR1Q5VY43 1037 aaPredicted RBP9.73□□□□□ -0.85
USP3-206ENST00000558157 KDM8Q8N371 416 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 ZNF676Q8N7Q3 588 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 OR9K2Q8NGE7 335 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 OR51L1Q8NGJ5 315 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 OR6K6Q8NGW6 343 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 R3HDM4Q96D70 268 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms