RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 CNIH3Q8TBE1 160 aa12.23□□□□□ -0.45
USP3-205ENST00000557884 LGALS12Q96DT0 336 aa12.23□□□□□ -0.45
USP3-205ENST00000557884 MNTQ99583 582 aa12.23□□□□□ -0.45
USP3-205ENST00000557884 ZNF319Q9P2F9 582 aa12.23□□□□□ -0.45
USP3-205ENST00000557884 RRP15Q9Y3B9 282 aaKnown RBP12.23□□□□□ -0.45
USP3-205ENST00000557884 ARID1AO14497 2285 aa12.23□□□□□ -0.45
USP3-205ENST00000557884 HIVEP1P15822 2718 aa12.23□□□□□ -0.45
USP3-205ENST00000557884 LYNX1G3V0Z9 82 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 PHYHO14832 338 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 LILRA1O75019 489 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 IGHV1-46P01743 117 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 HPXP02790 462 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 OR2T7P0C7T2 308 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 LYNX1P0DP58 116 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 DBTP11182 482 aaKnown RBP12.22□□□□□ -0.45
USP3-205ENST00000557884 DAOP14920 347 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 RIDAP52758 137 aaKnown RBP12.22□□□□□ -0.45
USP3-205ENST00000557884 CCL8P80075 99 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 TIGD6Q17RP2 521 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 C6orf52Q5T4I8 152 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 CLEC2AQ6UVW9 174 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 PRSS45Q7RTY3 260 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 TGIF2LYQ8IUE0 185 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 SETD9Q8NE22 299 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 OR2T27Q8NH04 317 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 NEU4Q8WWR8 484 aaPredicted RBP12.22□□□□□ -0.45
USP3-205ENST00000557884 REEP6Q96HR9 211 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 OR10A2Q9H208 303 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 NIPAL2Q9H841 368 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 SP140LQ9H930 580 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 MRM2Q9UI43 246 aaKnown RBP12.22□□□□□ -0.45
USP3-205ENST00000557884 GTF2A1LQ9UNN4 478 aa12.22□□□□□ -0.45
USP3-205ENST00000557884 TMEM269A0A1B0GVZ9 245 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 GGT3PA6NGU5 568 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 H0YAE9 185 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 TPD52L2O43399 206 aaKnown RBP12.21□□□□□ -0.45
USP3-205ENST00000557884 ZNF254O75437 659 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 RPP14O95059 124 aaKnown RBP12.21□□□□□ -0.45
USP3-205ENST00000557884 SELEP16581 610 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 ZNF85Q03923 595 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 EGR3Q06889 387 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 MFGE8Q08431 387 aaPredicted RBP12.21□□□□□ -0.45
USP3-205ENST00000557884 TNK1Q13470 666 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 RIPK1Q13546 671 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 PCGF3Q3KNV8 242 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 DEGS2Q6QHC5 323 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 Q6ZR03 302 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 C8orf59Q8N0T1 100 aaPredicted RBP12.21□□□□□ -0.45
USP3-205ENST00000557884 YIPF7Q8N8F6 280 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 OR2Z1Q8NG97 314 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 OR8B12Q8NGG6 310 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 SPRYD4Q8WW59 207 aaPredicted RBP12.21□□□□□ -0.45
USP3-205ENST00000557884 SGK3Q96BR1 496 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 VCX3BQ9H321 246 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 CYSLTR2Q9NS75 346 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 FAM206AQ9NX38 181 aa12.21□□□□□ -0.45
USP3-205ENST00000557884 FLNAP21333 2647 aaKnown RBP12.2□□□□□ -0.46
USP3-205ENST00000557884 IGHV4-30-2A0A087WSY4 118 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 DAPL1A0PJW8 107 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 CD300LBA8K4G0 201 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 IQCF6A8MYZ5 107 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 J3QRE1 110 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 XRCC2O43543 280 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 CDC14BO60729 498 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 KRT8P05787 483 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 LIPAP38571 399 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 PDLIM4P50479 330 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 ISL1P61371 349 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 IL18R1Q13478 541 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 ZNF829Q3KNS6 432 aaPredicted RBP12.2□□□□□ -0.46
USP3-205ENST00000557884 TP53I3Q53FA7 332 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 ZMAT1Q5H9K5 638 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 OR8G5Q8NG78 346 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 OR10AD1Q8NGE0 317 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 OR56B2PQ8NGI1 322 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 OR52H1Q8NGJ2 320 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 UBASH3BQ8TF42 649 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 TFAP2CQ92754 450 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 PPP1R14AQ96A00 147 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 REPIN1Q9BWE0 567 aaKnown RBP12.2□□□□□ -0.46
USP3-205ENST00000557884 DECR2Q9NUI1 292 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 CGGBP1Q9UFW8 167 aaPredicted RBP12.2□□□□□ -0.46
USP3-205ENST00000557884 GNG8Q9UK08 70 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 EXOGQ9Y2C4 368 aaKnown RBP12.2□□□□□ -0.46
USP3-205ENST00000557884 MYRFQ9Y2G1 1151 aa12.2□□□□□ -0.46
USP3-205ENST00000557884 RPL36Q9Y3U8 105 aaKnown RBP12.2□□□□□ -0.46
USP3-205ENST00000557884 ARFGEF3Q5TH69 2177 aa12.19□□□□□ -0.46
USP3-205ENST00000557884 METTL15A6NJ78 407 aa12.19□□□□□ -0.46
USP3-205ENST00000557884 LOC110117498-PIK3R3F6TDL0 507 aa12.19□□□□□ -0.46
USP3-205ENST00000557884 H7C1Q1 480 aa12.19□□□□□ -0.46
USP3-205ENST00000557884 PNPP00491 289 aa12.19□□□□□ -0.46
USP3-205ENST00000557884 COL8A2P25067 703 aa12.19□□□□□ -0.46
USP3-205ENST00000557884 ACTC1P68032 377 aa12.19□□□□□ -0.46
USP3-205ENST00000557884 ACTA1P68133 377 aa12.19□□□□□ -0.46
USP3-205ENST00000557884 FAM3AP98173 230 aa12.19□□□□□ -0.46
USP3-205ENST00000557884 HNRNPA0Q13151 305 aaKnown RBP12.19□□□□□ -0.46
USP3-205ENST00000557884 CDK5R2Q13319 367 aa12.19□□□□□ -0.46
USP3-205ENST00000557884 SPRNQ5BIV9 151 aa12.19□□□□□ -0.46
USP3-205ENST00000557884 IZUMO2Q6UXV1 221 aa12.19□□□□□ -0.46
USP3-205ENST00000557884 DNM1P46Q6ZS02 220 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms