RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 ILKAPQ9H0C8 392 aaPredicted RBP1.34□□□□□ -2.19
SCFD1-216ENST00000555550 LRRC40Q9H9A6 602 aa1.34□□□□□ -2.19
SCFD1-216ENST00000555550 XKRY2A2RUG3 117 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 PDZK1P1A8MUH7 402 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 H7C1H1 209 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 CXCL11O14625 94 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 CST1P01037 141 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 NCF2P19878 526 aaPredicted RBP1.33□□□□□ -2.2
SCFD1-216ENST00000555550 HLA-DMAP28067 261 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 PRPHP41219 470 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 TAS2R43P59537 309 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 RPL23AP62750 156 aaKnown RBP1.33□□□□□ -2.2
SCFD1-216ENST00000555550 ILKQ13418 452 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 NPSR1Q6W5P4 371 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 CERS6Q6ZMG9 384 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 MBOAT2Q6ZWT7 520 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 ARL6IP6Q8N6S5 226 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 LRRC75AQ8NAA5 344 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 OR6Q1Q8NGQ2 317 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 OR51M1Q9H341 326 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 DUSP21Q9H596 190 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 SLC2A8Q9NY64 477 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 TAS2R5Q9NYW4 299 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 SLC17A7Q9P2U7 560 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 EXTL2Q9UBQ6 330 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 FARSAQ9Y285 508 aaKnown RBP1.33□□□□□ -2.2
SCFD1-216ENST00000555550 LRRC42Q9Y546 428 aa1.33□□□□□ -2.2
SCFD1-216ENST00000555550 AKNAQ7Z591 1439 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 SORL1Q92673 2214 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 C3orf84H3BNL1 204 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 TAAR5O14804 337 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 CT45A6P0DMU7 189 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 CT45A5P0DMU8 189 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 CT45A7P0DMV0 189 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 PRKACBP22694 351 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 POLR2IP36954 125 aaKnown RBP1.32□□□□□ -2.2
SCFD1-216ENST00000555550 TNNT2P45379 298 aaPredicted RBP1.32□□□□□ -2.2
SCFD1-216ENST00000555550 ACLYP53396 1101 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 BST1Q10588 318 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 PPP1R7Q15435 360 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 CT45A1Q5HYN5 189 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 C1orf185Q5T7R7 199 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 PRAMEF5Q5TYX0 476 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 PRAMEF6Q5VXH4 476 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 RNASEKQ6P5S7 137 aaKnown RBP1.32□□□□□ -2.2
SCFD1-216ENST00000555550 TMEM107Q6UX40 140 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 RTL4Q6ZR62 310 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 LINC00469Q8N7U9 141 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 CT45A3Q8NHU0 189 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 HAUS1Q96CS2 278 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 TRIM44Q96DX7 344 aaPredicted RBP1.32□□□□□ -2.2
SCFD1-216ENST00000555550 ZBTB18Q99592 522 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 ANKRD60Q9BZ19 345 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 SLIRPQ9GZT3 109 aaKnown RBP1.32□□□□□ -2.2
SCFD1-216ENST00000555550 CCDC59Q9P031 241 aaKnown RBP1.32□□□□□ -2.2
SCFD1-216ENST00000555550 CSDC2Q9Y534 153 aaKnown RBP1.32□□□□□ -2.2
SCFD1-216ENST00000555550 ZBED9Q6R2W3 1325 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 SVILO95425 2214 aa1.32□□□□□ -2.2
SCFD1-216ENST00000555550 SDHAF1A6NFY7 115 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 NCBP2LA6PVI3 153 aaKnown RBP1.31□□□□□ -2.2
SCFD1-216ENST00000555550 FLOT1O75955 427 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 SLC1A1P43005 524 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 ACOT2P49753 483 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 CHIT1Q13231 466 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 CPTPQ5TA50 214 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 FAM131AQ6UXB0 335 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 PPP1R42Q7Z4L9 355 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 CMC1Q7Z7K0 106 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 CMTM1Q8IZ96 169 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 OR1L1Q8NH94 360 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 NUBPLQ8TB37 319 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 NT5C3AQ9H0P0 336 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 TRIM45Q9H8W5 580 aaPredicted RBP1.31□□□□□ -2.2
SCFD1-216ENST00000555550 HYPKQ9NX55 129 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 RWDD2AQ9UIY3 292 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 TMCC3Q9ULS5 477 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 HES2Q9Y543 173 aa1.31□□□□□ -2.2
SCFD1-216ENST00000555550 CENPBD1B2RD01 187 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 CLDN34H7C241 214 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 K7EMT4 169 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 CCDC22O60826 627 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 SERPINE2P07093 398 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 HNMTP50135 292 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 NDUFA8P51970 172 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 ELF3P78545 371 aaPredicted RBP1.3□□□□□ -2.2
SCFD1-216ENST00000555550 ZMYND11Q15326 602 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 ANKDD1AQ495B1 522 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 TPTE2P1Q5T6R2 138 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 AMMECR1LQ6DCA0 310 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 OPN5Q6U736 354 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 IQCKQ8N0W5 287 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 ZCCHC7Q8N3Z6 543 aaKnown RBP1.3□□□□□ -2.2
SCFD1-216ENST00000555550 LY6G5BQ8NDX9 201 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 C19orf18Q8NEA5 215 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 SLC26A10Q8NG04 563 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 RERGQ96A58 199 aaPredicted RBP1.3□□□□□ -2.2
SCFD1-216ENST00000555550 RNF145Q96MT1 663 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 CSPG4P5Q96PW8 444 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 KCNS3Q9BQ31 491 aa1.3□□□□□ -2.2
SCFD1-216ENST00000555550 GCOM2Q9BZD3 368 aaPredicted RBP1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms