RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 PLAUP00749 431 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 RAF1P04049 648 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 BMP4P12644 408 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 ZNF35P13682 527 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 CALCRP30988 508 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 OPRL1P41146 370 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 RAD52P43351 418 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 TGM4P49221 684 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 VBP1P61758 197 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 LSM3P62310 102 aaKnown RBP9.42□□□□□ -0.9
SHMT2-218ENST00000555213 ACTA2P62736 377 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 ACTG2P63267 376 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 EIF2B1Q14232 305 aaKnown RBP9.42□□□□□ -0.9
SHMT2-218ENST00000555213 INSL4Q14641 139 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 TAF13Q15543 124 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 CCDC58Q4VC31 144 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 CCDC92Q53HC0 331 aaPredicted RBP9.42□□□□□ -0.9
SHMT2-218ENST00000555213 RPL22L1Q6P5R6 122 aaKnown RBP9.42□□□□□ -0.9
SHMT2-218ENST00000555213 LRRN1Q6UXK5 716 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 UNQ9370/PRO34162Q6UXP9 181 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 CFAP77Q6ZQR2 320 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 DCXRQ7Z4W1 244 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 C1orf174Q8IYL3 243 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 ZNF679Q8IYX0 411 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 FBXL14Q8N1E6 418 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 PRSS35Q8N3Z0 413 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 ABHD4Q8TB40 342 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 RNF133Q8WVZ7 376 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 ASB17Q8WXJ9 295 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 TMEM203Q969S6 136 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 SPTSSAQ969W0 71 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 POM121L2Q96KW2 1035 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 LURAP1Q96LR2 239 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 CCL19Q99731 98 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 BCL2L14Q9BZR8 327 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 PPIL3Q9H2H8 161 aaKnown RBP9.42□□□□□ -0.9
SHMT2-218ENST00000555213 ZNF442Q9H7R0 627 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 CA10Q9NS85 328 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 GNG8Q9UK08 70 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 ABCA4P78363 2273 aa9.42□□□□□ -0.9
SHMT2-218ENST00000555213 CENPEQ02224 2701 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 ABCA12Q86UK0 2595 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 TRDV1A0A1B0GX56 115 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 A0A1W2PPR1 153 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 CCDC160A6NGH7 325 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 OR4C45A6NMZ5 311 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 ZNF878C9JN71 531 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 J3QW42 95 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 PHYHO14832 338 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 FAM157BP0CG42 384 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 CCL2P13500 99 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 CD53P19397 219 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 ANOS1P23352 680 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 DNASE1P24855 282 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 FGF9P31371 208 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-218ENST00000555213 KIR3DL2P43630 455 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 FABP6P51161 128 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 GBX2P52951 348 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-218ENST00000555213 CDK5R1Q15078 307 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 AGAP6Q5VW22 663 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 DEGS2Q6QHC5 323 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 VHLLQ6RSH7 139 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 GDPGP1Q6ZNW5 385 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 SPATC1Q76KD6 591 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 CDH24Q86UP0 819 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 NDNFQ8TB73 568 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 RGP1Q92546 391 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-218ENST00000555213 GHSRQ92847 366 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 UFD1Q92890 307 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 SLAMF6Q96DU3 332 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 CHCHD6Q9BRQ6 235 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 CENPMQ9NSP4 180 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 DDX28Q9NUL7 540 aaKnown RBP9.41□□□□□ -0.9
SHMT2-218ENST00000555213 TXNL4BQ9NX01 149 aaKnown RBP9.41□□□□□ -0.9
SHMT2-218ENST00000555213 FBXO9Q9UK97 447 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-218ENST00000555213 STUB1Q9UNE7 303 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 PMF1-BGLAPU3KQ54 211 aa9.41□□□□□ -0.9
SHMT2-218ENST00000555213 LOC100509620A0A075B734 347 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 SHISA3A0PJX4 238 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 E7EQL1 145 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 SMPD2O60906 423 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 RPP14O95059 124 aaKnown RBP9.4□□□□□ -0.9
SHMT2-218ENST00000555213 APOC1P02654 83 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 TACSTD2P09758 323 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 ZNF182P17025 639 aaPredicted RBP9.4□□□□□ -0.9
SHMT2-218ENST00000555213 HSD11B1P28845 292 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 GABRA5P31644 462 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 APOBEC3AP31941 199 aaPredicted RBP9.4□□□□□ -0.9
SHMT2-218ENST00000555213 GLRXP35754 106 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 SERPINF1P36955 418 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 SLC6A9P48067 706 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 UCP2P55851 309 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 TPTEP56180 551 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 SELENOVP59797 346 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 KRTAP10-9P60411 292 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 SNRPD2P62316 118 aaKnown RBP9.4□□□□□ -0.9
SHMT2-218ENST00000555213 GRB2P62993 217 aaKnown RBP9.4□□□□□ -0.9
SHMT2-218ENST00000555213 NKX6-1P78426 367 aaPredicted RBP9.4□□□□□ -0.9
SHMT2-218ENST00000555213 HGFACQ04756 655 aa9.4□□□□□ -0.9
SHMT2-218ENST00000555213 ALKBH1Q13686 389 aaKnown RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms