RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 A0A1B0GWJ7 208 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 LY6G6DO95868 133 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 HTR1FP30939 366 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 PRKXP51817 358 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 ROM1Q03395 351 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 HLXQ14774 488 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 TIGD6Q17RP2 521 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 ZNF829Q3KNS6 432 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 OR2T2Q6IF00 324 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 FAM81AQ8TBF8 368 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 THEM6Q8WUY1 208 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 RAB1CQ92928 201 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 IL4I1Q96RQ9 567 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 SLC30A2Q9BRI3 323 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 ABCB9Q9NP78 766 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 TMEM100Q9NV29 134 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 ACANP16112 2415 aa12.22□□□□□ -0.45
CCDC88C-207ENST00000554051 TANC2Q9HCD6 1990 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 GGT3PA6NGU5 568 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 ZNF670-ZNF695F2Z2N8 137 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 PPIHO43447 177 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 PCMT1P22061 227 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 EPHA2P29317 976 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 ZNF121P58317 390 aaPredicted RBP12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 EGR3Q06889 387 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 SNAI3Q3KNW1 292 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 TMEM255AQ5JRV8 349 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 SLC25A30Q5SVS4 291 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 GLYATL3Q5SZD4 288 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 CYB5R2Q6BCY4 276 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 ZBTB49Q6ZSB9 765 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 SPATC1Q76KD6 591 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 SPERTQ8NA61 448 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 CSNK2A3Q8NEV1 391 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 GTF3AQ92664 365 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 ERGIC1Q969X5 290 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 RAB39BQ96DA2 213 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 REPIN1Q9BWE0 567 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 CLN6Q9NWW5 311 aa12.21□□□□□ -0.45
CCDC88C-207ENST00000554051 CELSR1Q9NYQ6 3014 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 IGHV4-61A0A0C4DH41 118 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 LRRC30A6NM36 301 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 ANKRD30BLA7E2S9 258 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 CD300LBA8K4G0 201 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 TBX1O43435 398 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 GMDSO60547 372 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 BAG2O95816 211 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 RIDAP52758 137 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 SNRPGP62308 76 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 ACTC1P68032 377 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 ACTA1P68133 377 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 ZNF92Q03936 586 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 ZNF181Q2M3W8 571 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 Q6ZR03 302 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 SLC35F2Q8IXU6 374 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 ZNF679Q8IYX0 411 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 C1orf87Q8N0U7 546 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 OR5AS1Q8N127 324 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 PACRGLQ8N7B6 248 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 BHLHE23Q8NDY6 225 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 YIPF5Q969M3 257 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 REEP6Q96HR9 211 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 PGAM5Q96HS1 289 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 OR8B4Q96RC9 309 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 SMR3AQ99954 134 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 GSX1Q9H4S2 264 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 ADGRL4Q9HBW9 690 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 TMEM160Q9NX00 188 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 LRP12Q9Y561 859 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 RTTNQ86VV8 2226 aa12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 TEP1Q99973 2627 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-207ENST00000554051 M0R129 80 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 CDC14BO60729 498 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 MRPL3P09001 348 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 SBK2P0C263 348 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 OR2T7P0C7T2 308 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 CPT2P23786 658 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 ATP6V1E1P36543 226 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 CD200P41217 278 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 GATA4P43694 442 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 KRTAP1-1Q07627 177 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 RCN1Q15293 331 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 C6orf52Q5T4I8 152 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 FAM57BQ71RH2 274 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 PRSS45Q7RTY3 260 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 PLPP7Q8NBV4 271 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 MAPK1IP1LQ8NDC0 245 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 ZNF555Q8NEP9 628 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 OR2T27Q8NH04 317 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 MEGF10Q96KG7 1140 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 Q96MT0 163 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 OR2V2Q96R30 315 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 AMELYQ99218 206 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 APOL4Q9BPW4 351 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 ADAT1Q9BUB4 502 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 VCXQ9H320 206 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 TMEM106BQ9NUM4 274 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 SMPD3Q9NY59 655 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 DNAJC27Q9NZQ0 273 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms