RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 BTN1A1Q13410 526 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 ACTBL2Q562R1 376 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 C9orf40Q8IXQ3 194 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 MARCH1Q8TCQ1 289 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 FBLIM1Q8WUP2 373 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 SPIN2AQ99865 258 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 SPIN2BQ9BPZ2 258 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.59□□□□□ -0.073e-6■■□□□ 13.5
CUX1-213ENST00000549414 LANCL2Q9NS86 450 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 PRELID1Q9Y255 219 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 PLPP3O14495 311 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 NXPH3O95157 252 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 TBX6O95947 436 aaPredicted RBP14.59□□□□□ -0.07
CUX1-213ENST00000549414 SUMO3P55854 103 aaPredicted RBP14.59□□□□□ -0.07
CUX1-213ENST00000549414 NOXO1Q8NFA2 376 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 OR4D6Q8NGJ1 314 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 K7EPK0 472 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 INHBBP09529 407 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 ZNF728P0DKX0 622 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 RBP2P50120 134 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 ACSM1Q08AH1 577 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 FZD5Q13467 585 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 CEACAM16Q2WEN9 425 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 LILRB2Q8N423 598 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 FAM71E2Q8N5Q1 922 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 SLAMF9Q96A28 289 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 AICDAQ9GZX7 198 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 ENY2Q9NPA8 101 aa14.59□□□□□ -0.07
CUX1-213ENST00000549414 SLC25A30Q5SVS4 291 aa14.58□□□□□ -0.07
CUX1-213ENST00000549414 ARTNQ5T4W7 220 aa14.58□□□□□ -0.07
CUX1-213ENST00000549414 RNF128Q8TEB7 428 aa14.58□□□□□ -0.07
CUX1-213ENST00000549414 GLTPQ9NZD2 209 aa14.58□□□□□ -0.07
CUX1-213ENST00000549414 FBXO4Q9UKT5 387 aa14.58□□□□□ -0.07
CUX1-213ENST00000549414 ZNF780AO75290 641 aaPredicted RBP14.58□□□□□ -0.08
CUX1-213ENST00000549414 CBR3O75828 277 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 SNRPNP63162 240 aaKnown RBP14.58□□□□□ -0.08
CUX1-213ENST00000549414 SHBQ15464 509 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 D2HGDHQ8N465 521 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 SCPEP1Q9HB40 452 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 LSM2Q9Y333 95 aaKnown RBP14.58□□□□□ -0.08
CUX1-213ENST00000549414 PLA2G10O15496 165 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 PATE4P0C8F1 98 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 TUBG1P23258 451 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 FKBP2P26885 142 aaKnown RBP14.58□□□□□ -0.08
CUX1-213ENST00000549414 TMUB2Q71RG4 321 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 OR2AK2Q8NG84 335 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 OR51A4Q8NGJ6 313 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 OR51F2Q8NH61 342 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 SARGQ9BW04 601 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 FRRS1LQ9P0K9 344 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 ZNF223Q9UK11 482 aaPredicted RBP14.58□□□□□ -0.08
CUX1-213ENST00000549414 ZNF646O15015 1829 aaPredicted RBP14.58□□□□□ -0.08
CUX1-213ENST00000549414 DSPPQ9NZW4 1301 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 A0A0D9SG52 128 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 C17orf51A8MQB3 221 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 H3BUI4 141 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 M0R296 226 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 PHF1O43189 567 aaPredicted RBP14.58□□□□□ -0.08
CUX1-213ENST00000549414 HLA-DOBP13765 273 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 HOXB9P17482 250 aaPredicted RBP14.58□□□□□ -0.08
CUX1-213ENST00000549414 RAB6AP20340 208 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 NME2P22392 152 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 IL2RGP31785 369 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 RFPL4BQ6ZWI9 263 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 GSX2Q9BZM3 304 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 TRAPPC2LQ9UL33 140 aa14.58□□□□□ -0.08
CUX1-213ENST00000549414 ZFHX2Q9C0A1 2572 aaPredicted RBP14.58□□□□□ -0.08
CUX1-213ENST00000549414 EFSO43281 561 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 OR4E1P0C645 316 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 MC2RQ01718 297 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 B3GNTL1Q67FW5 361 aaPredicted RBP14.57□□□□□ -0.08
CUX1-213ENST00000549414 RTL6Q6ICC9 239 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 ADGRG3Q86Y34 549 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 CRLF2Q9HC73 371 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 B3GNT2Q9NY97 397 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 HAO2Q9NYQ3 351 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 FOXJ3Q9UPW0 622 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 HEATR5BQ9P2D3 2071 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 TCRBV16S1A1N1A0A5B0 115 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 C5orf49A4QMS7 147 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 PDCD1Q15116 288 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 ST3GAL2Q16842 350 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 OR5T1Q8NG75 326 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 PARP12Q9H0J9 701 aaKnown RBP14.57□□□□□ -0.08
CUX1-213ENST00000549414 P4HTMQ9NXG6 502 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 ICAM5Q9UMF0 924 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 MN1Q10571 1320 aaPredicted RBP14.57□□□□□ -0.08
CUX1-213ENST00000549414 MED6O75586 246 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 GLSO94925 669 aaPredicted RBP14.57□□□□□ -0.08
CUX1-213ENST00000549414 GIPP09681 153 aaPredicted RBP14.57□□□□□ -0.08
CUX1-213ENST00000549414 KRBOX4Q5JUW0 171 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 AKR1C8PQ5T2L2 129 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 RASL10BQ96S79 203 aa14.57□□□□□ -0.08
CUX1-213ENST00000549414 CD300LBA8K4G0 201 aa14.56□□□□□ -0.08
CUX1-213ENST00000549414 LANCL1O43813 399 aa14.56□□□□□ -0.08
CUX1-213ENST00000549414 GMDSO60547 372 aa14.56□□□□□ -0.08
CUX1-213ENST00000549414 SEMA7AO75326 666 aa14.56□□□□□ -0.08
CUX1-213ENST00000549414 GRPP07492 148 aa14.56□□□□□ -0.08
CUX1-213ENST00000549414 GALP22466 123 aa14.56□□□□□ -0.08
CUX1-213ENST00000549414 RELL2Q8NC24 303 aaPredicted RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms