RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 GGT3PA6NGU5 568 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 FAM20BO75063 409 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 IGHA1P01876 353 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 MYL12AP19105 171 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 KITLGP21583 273 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 CDKN1AP38936 164 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 ATP5J2P56134 94 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 ZNF85Q03923 595 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 GK2Q14410 553 aaPredicted RBP11.79□□□□□ -0.52
PTCH1-213ENST00000546820 SNAI3Q3KNW1 292 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 C6orf141Q5SZD1 244 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 LHFPL3Q86UP9 236 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 ITFG2Q969R8 447 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 TMEM80Q96HE8 168 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 REPIN1Q9BWE0 567 aaKnown RBP11.79□□□□□ -0.52
PTCH1-213ENST00000546820 GSX2Q9BZM3 304 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 POFUT1Q9H488 388 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 MOB1AQ9H8S9 216 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 CNOT2Q9NZN8 540 aaKnown RBP11.79□□□□□ -0.52
PTCH1-213ENST00000546820 MRM2Q9UI43 246 aaKnown RBP11.79□□□□□ -0.52
PTCH1-213ENST00000546820 PURGQ9UJV8 347 aaKnown RBP11.79□□□□□ -0.52
PTCH1-213ENST00000546820 GNG8Q9UK08 70 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 MYRFQ9Y2G1 1151 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 EXOSC1Q9Y3B2 195 aaKnown RBP11.79□□□□□ -0.52
PTCH1-213ENST00000546820 TPRKBQ9Y3C4 175 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 SNX5Q9Y5X3 404 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 TACC2O95359 2948 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 FBN2P35556 2912 aa11.79□□□□□ -0.52
PTCH1-213ENST00000546820 LOC110117498-PIK3R3F6TDL0 507 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 J3QLW9 94 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 MAGEB4O15481 346 aaPredicted RBP11.78□□□□□ -0.52
PTCH1-213ENST00000546820 RPP14O95059 124 aaKnown RBP11.78□□□□□ -0.52
PTCH1-213ENST00000546820 PIPP12273 146 aaPredicted RBP11.78□□□□□ -0.52
PTCH1-213ENST00000546820 ZNF19P17023 458 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 DDOSTP39656 456 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 ALDH3B1P43353 468 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 PTH2RP49190 550 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 ZNF81P51508 661 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 ZNF92Q03936 586 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 ST3GAL4Q11206 333 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 MRPL28Q13084 256 aaKnown RBP11.78□□□□□ -0.52
PTCH1-213ENST00000546820 HLXQ14774 488 aaPredicted RBP11.78□□□□□ -0.52
PTCH1-213ENST00000546820 CDONQ4KMG0 1287 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 GLYATL3Q5SZD4 288 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 ZNF684Q5T5D7 378 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 LIPNQ5VXI9 398 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 OR2T2Q6IF00 324 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 TMPRSS11AQ6ZMR5 421 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 SSX6Q7RTT6 188 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 PRSS45Q7RTY3 260 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 STX19Q8N4C7 294 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 RFLNBQ8N5W9 214 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 HAVCR2Q8TDQ0 301 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 SPRYD4Q8WW59 207 aaPredicted RBP11.78□□□□□ -0.52
PTCH1-213ENST00000546820 NEU4Q8WWR8 484 aaPredicted RBP11.78□□□□□ -0.52
PTCH1-213ENST00000546820 GGHQ92820 318 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 MYDGFQ969H8 173 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 SGK3Q96BR1 496 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 REEP6Q96HR9 211 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 CNBD2Q96M20 576 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 DIRC2Q96SL1 478 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 FOXC2Q99958 501 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 ALG8Q9BVK2 526 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 JAM3Q9BX67 310 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 ERVK13-1Q9NX77 482 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 MYEF2Q9P2K5 600 aaKnown RBP11.78□□□□□ -0.52
PTCH1-213ENST00000546820 PSORS1C1Q9UIG5 152 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 ITGB1BP2Q9UKP3 347 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 ZDHHC8Q9ULC8 765 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 GTF2A1LQ9UNN4 478 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 R4GMQ9 66 aa11.78□□□□□ -0.52
PTCH1-213ENST00000546820 A0A0U1RQV5 110 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 C17orf100A8MU93 164 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 PRR32B1ATL7 298 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 DENRO43583 198 aaKnown RBP11.77□□□□□ -0.53
PTCH1-213ENST00000546820 F12P00748 615 aaPredicted RBP11.77□□□□□ -0.53
PTCH1-213ENST00000546820 CCDC159P0C7I6 412 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 TNFSF4P23510 183 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 EFNA4P52798 201 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 ART1P52961 327 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 PCGF3Q3KNV8 242 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 ALKBH6Q3KRA9 238 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 TP53I3Q53FA7 332 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 BCL2L15Q5TBC7 163 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 SYS1Q8N2H4 156 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 ZNF540Q8NDQ6 660 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 OR8G5Q8NG78 346 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 OR13G1Q8NGZ3 307 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 OR2AE1Q8NHA4 323 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 SPSB4Q96A44 273 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 PERPQ96FX8 193 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 SIGLEC11Q96RL6 698 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 PBOV1Q9GZY1 135 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 SLC22A4Q9H015 551 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 TMEM100Q9NV29 134 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 FAM206AQ9NX38 181 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 NUFIP1Q9UHK0 495 aaKnown RBP11.77□□□□□ -0.53
PTCH1-213ENST00000546820 OR52A1Q9UKL2 312 aa11.77□□□□□ -0.53
PTCH1-213ENST00000546820 DIMT1Q9UNQ2 313 aaKnown RBP11.77□□□□□ -0.53
PTCH1-213ENST00000546820 CAB39Q9Y376 341 aaPredicted RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms