RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 SHANK1Q9Y566 2161 aa15.42■□□□□ 0.06
CLIP1-215ENST00000541108 ITPR1Q14643 2758 aa15.42■□□□□ 0.06
CLIP1-215ENST00000541108 LCATP04180 440 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 PSMB1P20618 241 aaKnown RBP15.41■□□□□ 0.06
CLIP1-215ENST00000541108 BMP5P22003 454 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 PSMD7P51665 324 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 HGFACQ04756 655 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 MDP1Q86V88 176 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 MOV10Q9HCE1 1003 aaKnown RBP15.41■□□□□ 0.06
CLIP1-215ENST00000541108 CRNNQ9UBG3 495 aaPredicted RBP15.41■□□□□ 0.06
CLIP1-215ENST00000541108 CKLFQ9UBR5 152 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 SH3BGRL2Q9UJC5 107 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 ATRXP46100 2492 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 POLEQ07864 2286 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 TRGV8A0A0C4DH27 118 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 LOC390937A0A1W2PQ73 354 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 MTRF1O75570 445 aaKnown RBP15.41■□□□□ 0.06
CLIP1-215ENST00000541108 CBR1P16152 277 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 FSTP19883 344 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 APLNRP35414 380 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 CEP78Q5JTW2 689 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 BHLHA15Q7RTS1 189 aaPredicted RBP15.41■□□□□ 0.06
CLIP1-215ENST00000541108 NR2C2APQ86WQ0 139 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 SERPINA12Q8IW75 414 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 FAM169BQ8N8A8 192 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 WDR31Q8NA23 367 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 ITFG2Q969R8 447 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 SGK3Q96BR1 496 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 C10orf35Q96D05 121 aa15.41■□□□□ 0.06
CLIP1-215ENST00000541108 USB1Q9BQ65 265 aaKnown RBP15.41■□□□□ 0.06
CLIP1-215ENST00000541108 C5orf49A4QMS7 147 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 OR5H1A6NKK0 313 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 DHRS7CA6NNS2 312 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 NOTOA8MTQ0 251 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 H3BSH0 61 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 TBX1O43435 398 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 IGKV3-15P01624 115 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 ZNF14P17017 642 aaPredicted RBP15.4■□□□□ 0.06
CLIP1-215ENST00000541108 BMXP51813 675 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 MOGQ16653 247 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 SNAI3Q3KNW1 292 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 COMMD2Q86X83 199 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 OR6Q1Q8NGQ2 317 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 KCTD12Q96CX2 325 aaKnown RBP15.4■□□□□ 0.06
CLIP1-215ENST00000541108 ELOVL5Q9NYP7 299 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 JKAMPQ9P055 326 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 AMDHD2Q9Y303 409 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 PEX16Q9Y5Y5 336 aa15.4■□□□□ 0.06
CLIP1-215ENST00000541108 A0A0G2JK05 382 aa15.39■□□□□ 0.05
CLIP1-215ENST00000541108 ANKRD61A6NGH8 418 aa15.39■□□□□ 0.05
CLIP1-215ENST00000541108 J3QW42 95 aa15.39■□□□□ 0.05
CLIP1-215ENST00000541108 XRCC2O43543 280 aa15.39■□□□□ 0.05
CLIP1-215ENST00000541108 DHRS3O75911 302 aa15.39■□□□□ 0.05
CLIP1-215ENST00000541108 IGFBP3P17936 291 aaPredicted RBP15.39■□□□□ 0.05
CLIP1-215ENST00000541108 ANOS1P23352 680 aa15.39■□□□□ 0.05
CLIP1-215ENST00000541108 CAV3P56539 151 aa15.39■□□□□ 0.05
CLIP1-215ENST00000541108 TSC22D1Q15714 1073 aa15.39■□□□□ 0.05
CLIP1-215ENST00000541108 TIMM23BQ5SRD1 257 aa15.39■□□□□ 0.05
CLIP1-215ENST00000541108 SFXN4Q6P4A7 337 aa15.39■□□□□ 0.05
CLIP1-215ENST00000541108 OR5D14Q8NGL3 314 aa15.39■□□□□ 0.05
CLIP1-215ENST00000541108 ACOT12Q8WYK0 555 aa15.39■□□□□ 0.05
CLIP1-215ENST00000541108 APOBEC3DQ96AK3 386 aaPredicted RBP15.39■□□□□ 0.05
CLIP1-215ENST00000541108 ORAI1Q96D31 301 aa15.39■□□□□ 0.05
CLIP1-215ENST00000541108 C6orf62Q9GZU0 229 aaPredicted RBP15.39■□□□□ 0.05
CLIP1-215ENST00000541108 TRAV8-7A0A075B6U6 113 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 MEGF11A6BM72 1044 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 C5orf63A6NC05 138 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 CCNOP22674 350 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 IL32P24001 234 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 S100A5P33763 92 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 MRPL49Q13405 166 aaKnown RBP15.38■□□□□ 0.05
CLIP1-215ENST00000541108 DYNC1I2Q13409 638 aaKnown RBP15.38■□□□□ 0.05
CLIP1-215ENST00000541108 LRRTM1Q86UE6 522 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 SLC30A7Q8NEW0 376 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 OR1J2Q8NGS2 313 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 OR14K1Q8NGZ2 314 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 SPSB4Q96A44 273 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 FGGYQ96C11 551 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 LYZL4Q96KX0 146 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 CXorf56Q9H5V9 222 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 AK6Q9Y3D8 172 aaKnown RBP15.38■□□□□ 0.05
CLIP1-215ENST00000541108 V9GY05 133 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 V9GYS6 101 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 SMIM30A4D0T7 59 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 ICMTO60725 284 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 NCR1O76036 304 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 EPXP11678 715 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 OR10A3P58181 314 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 TBC1D28Q2M2D7 210 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 GFOD2Q3B7J2 385 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 ASPHD2Q6ICH7 369 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 PGAP1Q75T13 922 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 AKAP1Q92667 903 aaKnown RBP eCLIP15.38■□□□□ 0.05
CLIP1-215ENST00000541108 REEP6Q96HR9 211 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 FAM71F1Q96KD3 344 aaPredicted RBP15.38■□□□□ 0.05
CLIP1-215ENST00000541108 TBCCD1Q9NVR7 557 aa15.38■□□□□ 0.05
CLIP1-215ENST00000541108 EEF1E1-BLOC1S5C9J1V9 151 aa15.37■□□□□ 0.05
CLIP1-215ENST00000541108 EEF1E1O43324 174 aaKnown RBP15.37■□□□□ 0.05
CLIP1-215ENST00000541108 DDOSTP39656 456 aa15.37■□□□□ 0.05
CLIP1-215ENST00000541108 MZT2AQ6P582 158 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms