RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 SHFQ7M4L6 423 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 BHLHE23Q8NDY6 225 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 OR6N2Q8NGY6 317 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 OR2AE1Q8NHA4 323 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 LRTOMTQ8WZ04 291 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 TMEM186Q96B77 213 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 OR51V1Q9H2C8 321 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 TOR3AQ9H497 397 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 G6PC2Q9NQR9 355 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 TMEM100Q9NV29 134 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 TMEFF2Q9UIK5 374 aaPredicted RBP11.96□□□□□ -0.49
USP28-209ENST00000540925 PPP1R3CQ9UQK1 317 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 ANK2Q01484 3957 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 CCDC182A6NF36 153 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 ZAR1LA6NP61 321 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 CD300LBA8K4G0 201 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 F5H5P2 479 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 G3V2T6 193 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 TMEM178BH3BS89 294 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 SELENOFO60613 162 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 FSTL3O95633 263 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 FCGR1AP12314 374 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 PMELP40967 661 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 CD200P41217 278 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 SLC6A9P48067 706 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 PRKXP51817 358 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 RAD23AP54725 363 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 ACTR3P61158 418 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 MAB21L1Q13394 359 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 TMEM155Q4W5P6 130 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 SLX4IPQ5VYV7 408 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 IL17RELQ6ZVW7 336 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 CXXC5Q7LFL8 322 aaKnown RBP11.95□□□□□ -0.5
USP28-209ENST00000540925 AMIGO2Q86SJ2 522 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 GLCCI1Q86VQ1 547 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 LRRC28Q86X40 367 aaPredicted RBP11.95□□□□□ -0.5
USP28-209ENST00000540925 CELF2-AS1Q8N7Q2 184 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 ZNF454Q8N9F8 522 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 OR51F2Q8NH61 342 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 RAB39BQ96DA2 213 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 OPA3Q9H6K4 179 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 CENPMQ9NSP4 180 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 HIF1ANQ9NWT6 349 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 KIF17Q9P2E2 1029 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 KLHDC2Q9Y2U9 406 aa11.95□□□□□ -0.5
USP28-209ENST00000540925 TRAV20A0A0B4J274 112 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 F5H0A9 414 aaPredicted RBP11.94□□□□□ -0.5
USP28-209ENST00000540925 IFNL4K9M1U5 179 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 PRKYO43930 277 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 HLA-DPB1P04440 258 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 SLC2A1P11166 492 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 SRD5A1P18405 259 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 SLC15A1P46059 708 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 CX3CR1P49238 355 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 SRP9P49458 86 aaKnown RBP11.94□□□□□ -0.5
USP28-209ENST00000540925 ZMYND11Q15326 602 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 SNAPC1Q16533 368 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 C12orf73Q69YU5 71 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 SPATC1Q76KD6 591 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 MRPL21Q7Z2W9 205 aaKnown RBP11.94□□□□□ -0.5
USP28-209ENST00000540925 ZDHHC13Q8IUH4 622 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 Q8TCH9 128 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 OTULINQ96BN8 352 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 CENPNQ96H22 339 aaPredicted RBP11.94□□□□□ -0.5
USP28-209ENST00000540925 TEAD3Q99594 435 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 KRT84Q9NSB2 600 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 TVP23BQ9NYZ1 205 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 MRPL15Q9P015 296 aaKnown RBP11.94□□□□□ -0.5
USP28-209ENST00000540925 ZNF319Q9P2F9 582 aa11.94□□□□□ -0.5
USP28-209ENST00000540925 POLR3KQ9Y2Y1 108 aaPredicted RBP11.94□□□□□ -0.5
USP28-209ENST00000540925 H3BNX3 289 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 XRCC2O43543 280 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 PLPP2O43688 288 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 CIB2O75838 187 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 IFNA2P01563 188 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 LYNP07948 512 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 ANPEPP15144 967 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 ALOX5APP20292 161 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 PCMT1P22061 227 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 BTG1P62324 171 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 APOFQ13790 326 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 TAF13Q15543 124 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 KLHL12Q53G59 568 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 AADACL4Q5VUY2 407 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 C1orf229Q6ZS94 237 aaPredicted RBP11.93□□□□□ -0.5
USP28-209ENST00000540925 SLC16A9Q7RTY1 509 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 PEG10Q86TG7 708 aaKnown RBP11.93□□□□□ -0.5
USP28-209ENST00000540925 ZNF420Q8TAQ5 688 aaPredicted RBP11.93□□□□□ -0.5
USP28-209ENST00000540925 SGK3Q96BR1 496 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 PLEKHA8Q96JA3 519 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 CIB1Q99828 191 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 GAL3ST1Q99999 423 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 TEX12Q9BXU0 123 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 GABARAPL3Q9BY60 117 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 SLC22A4Q9H015 551 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 LPAR2Q9HBW0 351 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 OAZ3Q9UMX2 235 aa11.93□□□□□ -0.5
USP28-209ENST00000540925 hCG_38984A0A1B0GV85 526 aa11.92□□□□□ -0.5
USP28-209ENST00000540925 PRR32B1ATL7 298 aa11.92□□□□□ -0.5
USP28-209ENST00000540925 E9PQ18 207 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms