RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 UNC119BA6NIH7 251 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 F5H5K5 113 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 ARPC3O15145 178 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 GMDSO60547 372 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 IGHV1-69P01742 117 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 LCATP04180 440 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 RHCEP18577 417 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 GGT2P36268 569 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 CENPAP49450 140 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 GSK3BP49841 420 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 PROK1P58294 105 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 HOXA4Q00056 320 aaPredicted RBP11.23□□□□□ -0.61
SS18-204ENST00000539244 SEC23BQ15437 767 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 SLC36A3Q495N2 470 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 METTL11BQ5VVY1 283 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.23□□□□□ -0.61
SS18-204ENST00000539244 NAA40Q86UY6 237 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 RP9Q8TA86 221 aaKnown RBP11.23□□□□□ -0.61
SS18-204ENST00000539244 SPRYD4Q8WW59 207 aaPredicted RBP11.23□□□□□ -0.61
SS18-204ENST00000539244 SLCO4A1Q96BD0 722 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 ERMAPQ96PL5 475 aaPredicted RBP11.23□□□□□ -0.61
SS18-204ENST00000539244 HOPXQ9BPY8 73 aaPredicted RBP11.23□□□□□ -0.61
SS18-204ENST00000539244 FUZQ9BT04 418 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 MMADHCQ9H3L0 296 aaPredicted RBP11.23□□□□□ -0.61
SS18-204ENST00000539244 SMURF1Q9HCE7 757 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 KRCC1Q9NPI7 259 aaPredicted RBP11.23□□□□□ -0.61
SS18-204ENST00000539244 AURKCQ9UQB9 309 aa11.23□□□□□ -0.61
SS18-204ENST00000539244 TRAV38-1A0A0B4J264 116 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 TRBV4-1A0A0J9YWV2 114 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 OOEPA6NGQ2 149 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 CD300LBA8K4G0 201 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 C3orf80F5H4A9 247 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 GSTA4O15217 222 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 ADAM20O43506 726 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 GPR137BO60478 399 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 FCN3O75636 299 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 CA6P23280 308 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 OTX1P32242 354 aaPredicted RBP11.22□□□□□ -0.61
SS18-204ENST00000539244 IER3P46695 156 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 SLC7A2P52569 658 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 TPTEP56180 551 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 OR8G1Q15617 311 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 TAF9Q16594 264 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 RFX4Q33E94 735 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 FGD3Q5JSP0 725 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 SFRP4Q6FHJ7 346 aaPredicted RBP11.22□□□□□ -0.61
SS18-204ENST00000539244 MRPL21Q7Z2W9 205 aaKnown RBP11.22□□□□□ -0.61
SS18-204ENST00000539244 HDXQ7Z353 690 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 LINC00346Q8IVM7 164 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 C7orf34Q96L11 122 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 NMNAT3Q96T66 252 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 ADAT1Q9BUB4 502 aaKnown RBP11.22□□□□□ -0.61
SS18-204ENST00000539244 SRA1Q9HD15 236 aaKnown RBP11.22□□□□□ -0.61
SS18-204ENST00000539244 FGFR1OP2Q9NVK5 253 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 MRPL15Q9P015 296 aaKnown RBP11.22□□□□□ -0.61
SS18-204ENST00000539244 KAAG1Q9UBP8 84 aa11.22□□□□□ -0.61
SS18-204ENST00000539244 FAM32AQ9Y421 112 aaKnown RBP11.22□□□□□ -0.61
SS18-204ENST00000539244 SLC22A31A6NKX4 558 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 M0R135 149 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 ECDO95905 644 aaPredicted RBP11.21□□□□□ -0.61
SS18-204ENST00000539244 RENP00797 406 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 IGHV4-59P01825 116 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 HIST1H1CP16403 213 aaKnown RBP11.21□□□□□ -0.61
SS18-204ENST00000539244 SLC6A6P31641 620 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 GCSAMQ8N6F7 178 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 SPERTQ8NA61 448 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 ZSCAN4Q8NAM6 433 aaPredicted RBP11.21□□□□□ -0.61
SS18-204ENST00000539244 OR2AJ1Q8NGZ0 328 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 FANK1Q8TC84 345 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 FAM162AQ96A26 154 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 ZNF799Q96GE5 643 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 MAP6Q96JE9 813 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 PKP2Q99959 881 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 OR52D1Q9H346 318 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 RPRD1BQ9NQG5 326 aaKnown RBP11.21□□□□□ -0.61
SS18-204ENST00000539244 MRPL22Q9NWU5 206 aaKnown RBP11.21□□□□□ -0.61
SS18-204ENST00000539244 ABCD2Q9UBJ2 740 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 KCNG2Q9UJ96 466 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 KPTNQ9Y664 436 aa11.21□□□□□ -0.61
SS18-204ENST00000539244 A0A0U1RQK1 487 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 OR6C68A6NDL8 312 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 NDUFAB1O14561 156 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 LHBP01229 141 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 ZNF92Q03936 586 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 OR8B8Q15620 311 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 SNAI3Q3KNW1 292 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 TEX36Q5VZQ5 186 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 METAP1DQ6UB28 335 aaPredicted RBP11.2□□□□□ -0.62
SS18-204ENST00000539244 HACD2Q6Y1H2 254 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 GDPGP1Q6ZNW5 385 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 BTN2A1Q7KYR7 527 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 FAM90A1Q86YD7 464 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 PIP4P2Q8N4L2 257 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 OR4K13Q8NH42 304 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 LRTOMTQ8WZ04 291 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 LHX4Q969G2 390 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 UBE2FQ969M7 185 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 SPTSSAQ969W0 71 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 DMRTB1Q96MA1 342 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 DPAGT1Q9H3H5 408 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms