RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 GPR183P32249 361 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 DUTP33316 252 aaKnown RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 MAGEA3P43357 314 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 YAP1P46937 504 aaKnown RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 ZFP36L2P47974 494 aaKnown RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 STARP49675 285 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 PSMD4P55036 377 aaKnown RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 RAB14P61106 215 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 PSME3P61289 254 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 AP1S1P61966 158 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 RPS21P63220 83 aaKnown RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 SLAMF1Q13291 335 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 ASAH1Q13510 395 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 KIAA0141Q14154 515 aaPredicted RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 IRF4Q15306 451 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 CHI3L2Q15782 390 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 NRF1Q16656 503 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 PAGE2BQ5JRK9 111 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 LCE1CQ5T751 118 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 LCE1BQ5T7P3 118 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 ASPHD2Q6ICH7 369 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 FAM45BPQ6NSW5 357 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 SLC27A4Q6P1M0 643 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 TEX261Q6UWH6 196 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 Q6ZSR6 202 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 SLC26A11Q86WA9 606 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 MARCH9Q86YJ5 346 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 TGIF2LXQ8IUE1 241 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 SLC43A2Q8N370 569 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 DHRSXQ8N5I4 330 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 ATPAF2Q8N5M1 289 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 TCEANCQ8N8B7 351 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 GDPD1Q8N9F7 314 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 SYT14Q8NB59 555 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 CHDHQ8NE62 594 aaPredicted RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 TRPV3Q8NET8 790 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 BPIFB6Q8NFQ5 453 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 FAM45AQ8TCE6 357 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 KCTD4Q8WVF5 259 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 C1orf54Q8WWF1 131 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 CCDC124Q96CT7 223 aaKnown RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 CENPNQ96H22 339 aaPredicted RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 PPP1R16AQ96I34 528 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 C1orf147Q96MC9 270 aaPredicted RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 RNF145Q96MT1 663 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 TRIB3Q96RU7 358 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 LYSMD1Q96S90 227 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 NPAS2Q99743 824 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 ZNF251Q9BRH9 671 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 UGT2B28Q9BY64 529 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 FRMD8P1Q9BZ68 369 aaPredicted RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 DNTTIP1Q9H147 329 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 OR51M1Q9H341 326 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 SYNDIG1Q9H7V2 258 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 WDR41Q9HAD4 459 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 NT5MQ9NPB1 228 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 POLE4Q9NR33 117 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 PRR34Q9NV39 138 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 TAS2R9Q9NYW1 312 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 USE1Q9NZ43 259 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 PSORS1C1Q9UIG5 152 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 KIF25Q9UIL4 384 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 TMED7Q9Y3B3 224 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 PCYT1BQ9Y5K3 369 aaPredicted RBP2.74□□□□□ -1.97
USP48-215ENST00000534705 U3KQ87 197 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 EXPH5Q8NEV8 1989 aa2.74□□□□□ -1.97
USP48-215ENST00000534705 SHANK1Q9Y566 2161 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ATRXP46100 2492 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 A0A0J9YYE9 177 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 PNMA8CA0A1B0GUJ8 204 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 TCRBV9S1A1TA0A576 114 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 C9orf170A2RU37 121 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 PRORSD1PA6NEY8 169 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 B4DXG7 233 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 TRIM49D1C9J1S8 452 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 KRBOX1C9JBD0 128 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 E5RGE8 158 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 SGK494L7N484 410 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 KCNK1O00180 336 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ARPC3O15145 178 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 FCMRO60667 390 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 CST8O60676 142 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 TPST2O60704 377 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 OR2B3O76000 313 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 NDUFA7O95182 113 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 VAPBO95292 243 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 TRBC1P01850 177 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 IL6P05231 212 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 C2P06681 752 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 HOXC4P09017 264 aaPredicted RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 FBP1P09467 338 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ALPIP09923 528 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 UMPSP11172 480 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 SPI1P17947 270 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 NELFEP18615 380 aaKnown RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 TEAD1P28347 426 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 SHMT2P34897 504 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 CA5AP35218 305 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 SPRP35270 261 aaPredicted RBP2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms