RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079		G3V4G9	280 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	BLOC1S5-TXNDC5	H3BN57	136 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	TNFRSF11B	O00300	401 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	KPNA4	O00629	521 aa	Predicted RBP	10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	OPN1SW	P03999	348 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	OPN1MW	P04001	364 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	OPN1MW2	P0DN77	364 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	OPN1MW3	P0DN78	364 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	GUCA1A	P43080	201 aa	Predicted RBP	10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	SRP9	P49458	86 aa	Known RBP	10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	RPL18	Q07020	188 aa	Known RBP	10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	CD47	Q08722	323 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	SGCA	Q16586	387 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	MICA	Q29983	383 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	ARMC4	Q5T2S8	1044 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	CYP4Z1	Q86W10	505 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	LINC00471	Q8N535	108 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	SMYD1	Q8NB12	490 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	GIPC3	Q8TF64	312 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	PPP1R14A	Q96A00	147 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	WFDC6	Q9BQY6	131 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	POLR2J2	Q9GZM3	115 aa	Known RBP	10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	POLR2J3	Q9H1A7	115 aa	Known RBP	10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	DPAGT1	Q9H3H5	408 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	INIP	Q9NRY2	104 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	FAM118A	Q9NWS6	357 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	SH3GLB1	Q9Y371	365 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079	CPSF4L	A6NMK7	179 aa	Known RBP	10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	ZNF879	B4DU55	563 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079		M0R3H8	397 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	PIP5K1C	O60331	668 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	F13B	P05160	661 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	TSPAN19	P0C672	248 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	LAP3	P28838	519 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	RRM2	P31350	389 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	CFHR2	P36980	270 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	OR1E2	P47887	323 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	DAP	P51397	102 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	NPTX1	Q15818	432 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	CD276	Q5ZPR3	534 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	WDR25	Q64LD2	544 aa	Predicted RBP	10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	RUSC1-AS1	Q66K80	236 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	FOXL2NB	Q6ZUU3	175 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	ZNF555	Q8NEP9	628 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	HAVCR1	Q96D42	359 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	MEGF10	Q96KG7	1140 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	CNBD2	Q96M20	576 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	PCGF1	Q9BSM1	259 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	ALG12	Q9BV10	488 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	TOR3A	Q9H497	397 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	ENOPH1	Q9UHY7	261 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	SLC7A7	Q9UM01	511 aa		10.33	□□□□□ -0.76
CAPN1-223	ENST00000533079	WNK1	Q9H4A3	2382 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	CENPVL3	A0A0U1RRI6	287 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	LOC100130705	A0A1B0GUX0	176 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079		A0A1W2PRQ8	180 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	C12orf71	A8MTZ7	269 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	TSPAN9	O75954	239 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	TOX4	O94842	621 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	LYPD3	O95274	346 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	CYB5R3	P00387	301 aa	Predicted RBP	10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	THY1	P04216	161 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	MMP9	P14780	707 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	RAC2	P15153	192 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	MSR1	P21757	451 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	FUT4	P22083	530 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	PRKACG	P22612	351 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	RBM34	P42696	430 aa	Known RBP	10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	IER3	P46695	156 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	FMOD	Q06828	376 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	SCRN3	Q0VDG4	424 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	DGCR6	Q14129	220 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	KCTD21	Q4G0X4	260 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	DHRS7B	Q6IAN0	325 aa	Predicted RBP	10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	SLC25A47	Q6Q0C1	308 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079		Q6ZSV7	163 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	THAP5	Q7Z6K1	395 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	OR6T1	Q8NGN1	323 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	MRAP	Q8TCY5	172 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	CYGB	Q8WWM9	190 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	LIPH	Q8WWY8	451 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	NSMAF	Q92636	917 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	HDAC2	Q92769	488 aa	Known RBP	10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	CMBL	Q96DG6	245 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	MBOAT4	Q96T53	435 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	FUZ	Q9BT04	418 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	CDADC1	Q9BWV3	514 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	ANKRD19P	Q9H560	264 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	NMNAT1	Q9HAN9	279 aa	Predicted RBP	10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	MYRF	Q9Y2G1	1151 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079		U3KQV3	271 aa		10.32	□□□□□ -0.76
CAPN1-223	ENST00000533079	IGKV1D-43	A0A0B4J1Z2	117 aa		10.31	□□□□□ -0.76
CAPN1-223	ENST00000533079	IGHV1-69D	A0A0B4J2H0	117 aa		10.31	□□□□□ -0.76
CAPN1-223	ENST00000533079	BTBD17	A6NE02	478 aa		10.31	□□□□□ -0.76
CAPN1-223	ENST00000533079	TRIM64C	A6NLI5	447 aa		10.31	□□□□□ -0.76
CAPN1-223	ENST00000533079		H0YL77	283 aa		10.31	□□□□□ -0.76
CAPN1-223	ENST00000533079	FFAR1	O14842	300 aa		10.31	□□□□□ -0.76
CAPN1-223	ENST00000533079	DOK2	O60496	412 aa		10.31	□□□□□ -0.76
CAPN1-223	ENST00000533079	OR7A10	O76100	309 aa		10.31	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms