RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 U3KQA8 63 aa18.82■□□□□ 0.6
VPS28-205ENST00000526204 USP34Q70CQ2 3546 aa18.82■□□□□ 0.6
VPS28-205ENST00000526204 TP53I11O14683 189 aa18.81■□□□□ 0.6
VPS28-205ENST00000526204 STK17BO94768 372 aa18.81■□□□□ 0.6
VPS28-205ENST00000526204 NR2C1P13056 603 aa18.81■□□□□ 0.6
VPS28-205ENST00000526204 MGMTP16455 207 aa18.81■□□□□ 0.6
VPS28-205ENST00000526204 CDAP32320 146 aa18.81■□□□□ 0.6
VPS28-205ENST00000526204 FOXK1P85037 733 aa18.81■□□□□ 0.6
VPS28-205ENST00000526204 MFAP5Q13361 173 aa18.81■□□□□ 0.6
VPS28-205ENST00000526204 INPP5JQ15735 1006 aaPredicted RBP18.81■□□□□ 0.6
VPS28-205ENST00000526204 ABHD12BQ7Z5M8 362 aaPredicted RBP18.81■□□□□ 0.6
VPS28-205ENST00000526204 COMMD2Q86X83 199 aa18.81■□□□□ 0.6
VPS28-205ENST00000526204 ZNF101Q8IZC7 436 aa18.81■□□□□ 0.6
VPS28-205ENST00000526204 GVQW1Q8N7I0 195 aa18.81■□□□□ 0.6
VPS28-205ENST00000526204 NUDCD2Q8WVJ2 157 aa18.81■□□□□ 0.6
VPS28-205ENST00000526204 ASH2LQ9UBL3 628 aa18.81■□□□□ 0.6
VPS28-205ENST00000526204 ADAMTS9Q9P2N4 1935 aa18.81■□□□□ 0.6
VPS28-205ENST00000526204 AQP7P3A6NL99 342 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 IL2RAP01589 272 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 IFNA6P05013 189 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 SLC25A4P12235 298 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 GNB3P16520 340 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 PRKXP51817 358 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 ZNF121P58317 390 aaPredicted RBP18.8■□□□□ 0.6
VPS28-205ENST00000526204 SLC35A1P78382 337 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 LYSMD4Q5XG99 296 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 CARD17Q5XLA6 110 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 MRPL14Q6P1L8 145 aaKnown RBP18.8■□□□□ 0.6
VPS28-205ENST00000526204 TMEM81Q6P7N7 255 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 PDZD9Q8IXQ8 264 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 PDCD10Q9BUL8 212 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 SELENOIQ9C0D9 397 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 SPEF1Q9Y4P9 236 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 KCNMB2Q9Y691 235 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 ARID1BQ8NFD5 2236 aaPredicted RBP18.8■□□□□ 0.6
VPS28-205ENST00000526204 SIGLEC6O43699 453 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 QDPRP09417 244 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 CCL1P22362 96 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 HRH1P35367 487 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 CASRP41180 1078 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 GRB2P62993 217 aaKnown RBP18.8■□□□□ 0.6
VPS28-205ENST00000526204 TMEM176BQ3YBM2 270 aaPredicted RBP18.8■□□□□ 0.6
VPS28-205ENST00000526204 LCN10Q6JVE6 187 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 C17orf107Q6ZR85 190 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 WDSUB1Q8N9V3 476 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 OR8B12Q8NGG6 310 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 KCNG3Q8TAE7 436 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 ELP5Q8TE02 316 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 SAP25Q8TEE9 199 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 MITD1Q8WV92 249 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 CXorf58Q96LI9 332 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 PHB2Q99623 299 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 MRPS28Q9Y2Q9 187 aaKnown RBP18.8■□□□□ 0.6
VPS28-205ENST00000526204 LAMA1P25391 3075 aa18.8■□□□□ 0.6
VPS28-205ENST00000526204 SULT2B1O00204 365 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 OR2F2O95006 317 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 GSTP1P09211 210 aaKnown RBP18.79■□□□□ 0.6
VPS28-205ENST00000526204 UBBP0CG47 229 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 CD96P40200 585 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 RPS27AP62979 156 aaKnown RBP18.79■□□□□ 0.6
VPS28-205ENST00000526204 UBA52P62987 128 aaKnown RBP18.79■□□□□ 0.6
VPS28-205ENST00000526204 OR2F1Q13607 317 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 ZNF345Q14585 488 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 OR52W1Q6IF63 320 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 PTCRAQ6ISU1 281 aaPredicted RBP18.79■□□□□ 0.6
VPS28-205ENST00000526204 DOK3Q7L591 496 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 NXT1Q9UKK6 140 aaKnown RBP18.79■□□□□ 0.6
VPS28-205ENST00000526204 C9orf170A2RU37 121 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 ZNF814B7Z6K7 855 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 KRBOX1C9JBD0 128 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 SCO1O75880 301 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 ABOP16442 354 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 SFTPDP35247 375 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 IL13RA1P78552 427 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 C11orf87Q6NUJ2 197 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 GLIPR1L1Q6UWM5 242 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 OR5AS1Q8N127 324 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 NAT6Q93015 286 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 MRGPRFQ96AM1 343 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 CST11Q9H112 138 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 WDR54Q9H977 334 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 PNRC2Q9NPJ4 139 aaKnown RBP18.79■□□□□ 0.6
VPS28-205ENST00000526204 GPR84Q9NQS5 396 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 ZNF230Q9UIE0 474 aaPredicted RBP18.79■□□□□ 0.6
VPS28-205ENST00000526204 KCNK7Q9Y2U2 307 aa18.79■□□□□ 0.6
VPS28-205ENST00000526204 CHCHD2Q9Y6H1 151 aaPredicted RBP18.79■□□□□ 0.6
VPS28-205ENST00000526204 CABIN1Q9Y6J0 2220 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 A0A087WZY1 265 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 A0A1B0GW55 424 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 RER1O15258 196 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 DUX4L2P0CJ85 424 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 DUX4L3P0CJ86 424 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 DUX4L4P0CJ87 422 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 DUX4L5P0CJ88 424 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 DUX4L6P0CJ89 424 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 DUX4L7P0CJ90 424 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 CX3CR1P49238 355 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 DHPSP49366 369 aaPredicted RBP18.78■□□□□ 0.6
VPS28-205ENST00000526204 PPP1R1AQ13522 171 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 KCNRGQ8N5I3 272 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms