RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 MRPL55Q7Z7F7 128 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMED4Q7Z7H5 227 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 LYG2Q86SG7 212 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TAC4Q86UU9 113 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PPP1R27Q86WC6 154 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 HORMAD1Q86X24 394 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 C17orf82Q86X59 251 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 HOGA1Q86XE5 327 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CALHM1Q8IU99 346 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRAPPC5Q8IUR0 188 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 LACC1Q8IV20 430 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCDC71Q8IV32 467 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 NAXDQ8IW45 347 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 WDFY1Q8IWB7 410 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SKA3Q8IX90 412 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 NRMQ8IXM6 262 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RIMKLAQ8IXN7 391 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF440Q8IYI8 595 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PIANPQ8IYJ0 282 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PUSL1Q8N0Z8 303 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIR2DL5AQ8N109 375 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 DAW1Q8N136 415 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZFP82Q8N141 532 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 STK40Q8N2I9 435 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPD1LQ8N335 351 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RIBC1Q8N443 379 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PNKDQ8N490 385 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CBR4Q8N4T8 237 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SPICQ8N5J4 248 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 C2orf73Q8N5S3 287 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 METTL13Q8N6R0 699 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 LRRC52Q8N7C0 313 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCNYL1Q8N7R7 359 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 STPG4Q8N801 248 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF441Q8N8Z8 693 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF557Q8N988 423 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACOT4Q8N9L9 421 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 WDR31Q8NA23 367 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 HSD17B11Q8NBQ5 300 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 NUP37Q8NFH4 326 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PXT1Q8NFP0 134 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KBTBD8Q8NFY9 601 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR2T33Q8NG76 320 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR8G5Q8NG78 346 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR2L5Q8NG80 312 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR4F15Q8NGB8 312 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR4K17Q8NGC6 315 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR5AP2Q8NGF4 316 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR8K1Q8NGG5 319 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR2D3Q8NGH3 330 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR52E4Q8NGH9 312 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR5L1Q8NGL2 311 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR10G7Q8NGN6 311 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR2A1Q8NGT9 310 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR10R2Q8NGX6 335 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR8U1Q8NH10 309 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR4C3Q8NH37 302 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR5B3Q8NH48 314 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR51Q1Q8NH59 317 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR56B4Q8NH76 319 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR2V1Q8NHB1 315 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIR2DL5BQ8NHK3 375 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RFESDQ8TAC1 157 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 STOML3Q8TAV4 291 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZFAND1Q8TCF1 268 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 DYNC2LI1Q8TCX1 351 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SFXN5Q8TD22 340 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 DOK4Q8TEW6 326 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 C16orf78Q8WTQ4 265 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM222BQ8WU58 562 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM172AQ8WUF8 416 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZDHHC19Q8WVZ1 309 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 APH1BQ8WW43 257 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRUB1Q8WWH5 349 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 NELFBQ8WX92 580 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CRYGNQ8WXF5 182 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 AP3S1Q92572 193 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 NDRG1Q92597 394 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FRAT1Q92837 279 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FGF14Q92915 247 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 C11orf52Q96A22 123 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 NTAN1Q96AB6 310 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 EEF1AKMT3Q96AZ1 226 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CREB3L1Q96BA8 519 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FGGYQ96C11 551 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF524Q96C55 264 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FLYWCH2Q96CP2 140 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TLCD1Q96CP7 247 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF689Q96CS4 500 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 YIPF6Q96EC8 236 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 WDR34Q96EX3 536 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PIK3IP1Q96FE7 263 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CMTM7Q96FZ5 175 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MED8Q96G25 268 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MS4A14Q96JA4 679 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ST6GAL2Q96JF0 529 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 BTN2A3PQ96KV6 586 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF354BQ96LW1 612 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PACRGQ96M98 296 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KCTD7Q96MP8 289 aa0.47□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms