RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 PRKXP51817 358 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 ROM1Q03395 351 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 EIF2B1Q14232 305 aaKnown RBP8.19□□□□□ -1.1
RNF4-221ENST00000513643 ZNF181Q2M3W8 571 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 HFEQ30201 348 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 KLHL12Q53G59 568 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 SLC25A30Q5SVS4 291 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 GLYATL3Q5SZD4 288 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 NXNL2Q5VZ03 156 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 DEGS2Q6QHC5 323 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 SLC16A9Q7RTY1 509 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 LRRC28Q86X40 367 aaPredicted RBP8.19□□□□□ -1.1
RNF4-221ENST00000513643 LINC01356Q8N9X3 169 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 OR2Z1Q8NG97 314 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 OR6N2Q8NGY6 317 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 TMEM163Q8TC26 289 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 CCL17Q92583 94 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 MEGF10Q96KG7 1140 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 OR2V2Q96R30 315 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 COPS4Q9BT78 406 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 YIPF3Q9GZM5 350 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 SEMA6AQ9H2E6 1030 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 CENPMQ9NSP4 180 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 TMEM106BQ9NUM4 274 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 TMEM100Q9NV29 134 aa8.19□□□□□ -1.1
RNF4-221ENST00000513643 B4DSR2 109 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 CLDN25C9JDP6 229 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 TMEM178BH3BS89 294 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 IFNL4K9M1U5 179 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 TGFAP01135 160 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 IGLV3-1P01715 115 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 IGHV2-5P01817 119 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 LYNP07948 512 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 SLC2A1P11166 492 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 TNFRSF1AP19438 455 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 DCTDP32321 178 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 THBS2P35442 1172 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 RBMXP38159 391 aaKnown RBP8.18□□□□□ -1.1
RNF4-221ENST00000513643 CD200P41217 278 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 DVL1P1P54792 670 aaPredicted RBP8.18□□□□□ -1.1
RNF4-221ENST00000513643 FAM3AP98173 230 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 SLC3A1Q07837 685 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 MALLQ13021 153 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 HNRNPA0Q13151 305 aaKnown RBP8.18□□□□□ -1.1
RNF4-221ENST00000513643 APOFQ13790 326 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 FAM166AQ6J272 317 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 PGAP1Q75T13 922 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 MEPCEQ7L2J0 689 aaKnown RBP8.18□□□□□ -1.1
RNF4-221ENST00000513643 BCDIN3DQ7Z5W3 292 aaKnown RBP8.18□□□□□ -1.1
RNF4-221ENST00000513643 OR5AS1Q8N127 324 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 TCEANCQ8N8B7 351 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 PLPP7Q8NBV4 271 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 OR52H1Q8NGJ2 320 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 OR2AE1Q8NHA4 323 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 Q8TCH9 128 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 ITLN1Q8WWA0 313 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 RAB1CQ92928 201 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 RBM4BQ9BQ04 359 aaKnown RBP8.18□□□□□ -1.1
RNF4-221ENST00000513643 TEX12Q9BXU0 123 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 SLC22A4Q9H015 551 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 OPA3Q9H6K4 179 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 ZNF665Q9H7R5 613 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 TREM2Q9NZC2 230 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 MRPL15Q9P015 296 aaKnown RBP8.18□□□□□ -1.1
RNF4-221ENST00000513643 KIF17Q9P2E2 1029 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 ENOPH1Q9UHY7 261 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 CDC42EP3Q9UKI2 254 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 POLR3KQ9Y2Y1 108 aaPredicted RBP8.18□□□□□ -1.1
RNF4-221ENST00000513643 NPTNQ9Y639 398 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 WNK2Q9Y3S1 2297 aa8.18□□□□□ -1.1
RNF4-221ENST00000513643 TANC2Q9HCD6 1990 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 hCG_38984A0A1B0GV85 526 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 ACOD1A6NK06 481 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 F5H0A9 414 aaPredicted RBP8.17□□□□□ -1.1
RNF4-221ENST00000513643 F5H5P2 479 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 TNFRSF13BO14836 293 aaPredicted RBP8.17□□□□□ -1.1
RNF4-221ENST00000513643 XRCC2O43543 280 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 GMDSO60547 372 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 SRSF10O75494 262 aaKnown RBP8.17□□□□□ -1.1
RNF4-221ENST00000513643 APOC1P02654 83 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 TNFSF4P23510 183 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 CPT2P23786 658 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 DDOSTP39656 456 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 CX3CR1P49238 355 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 MMP16P51512 607 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 HCCSP53701 268 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 PRSS12P56730 875 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 ZNF121P58317 390 aaPredicted RBP8.17□□□□□ -1.1
RNF4-221ENST00000513643 MVKQ03426 396 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 OR8B8Q15620 311 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 TMEM155Q4W5P6 130 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 AVPI1Q5T686 147 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 KLBQ86Z14 1044 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 C10orf67Q8IYJ2 551 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 OR10AD1Q8NGE0 317 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 OR8J1Q8NGP2 316 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 TRUB1Q8WWH5 349 aaKnown RBP8.17□□□□□ -1.1
RNF4-221ENST00000513643 ITFG2Q969R8 447 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 ERGIC1Q969X5 290 aa8.17□□□□□ -1.1
RNF4-221ENST00000513643 OTULINQ96BN8 352 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms