RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 NLKQ9UBE8 527 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 B9D1Q9UPM9 204 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 MEIS3P1A6NDR6 274 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 TRAF3IP2O43734 574 aaPredicted RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 CDC14BO60729 498 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 HLA-DOBP13765 273 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 HOXB1P14653 301 aaPredicted RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 ADRA2CP18825 462 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 RAB4AP20338 218 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 CTSSP25774 331 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 LGALS7P47929 136 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 PAFAH1B2P68402 229 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 DOC2BQ14184 412 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 TIGITQ495A1 244 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 SFXN4Q6P4A7 337 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 ZNF620Q6ZNG0 422 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 SMCO4Q9NRQ5 59 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 GMPR2Q9P2T1 348 aaKnown RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 MYH11P35749 1972 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 TMEM200CA6NKL6 621 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 PTTG1O95997 202 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 TFP02787 698 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 ZNF17P17021 662 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 MRPL19P49406 292 aaKnown RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 MLF1P58340 268 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 UBE2IP63279 158 aaKnown RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 POU4F3Q15319 338 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 SSX2Q16385 188 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 SOWAHCQ53LP3 525 aaPredicted RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 STEAP1BQ6NZ63 245 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 DEGS2Q6QHC5 323 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 SLC25A26Q70HW3 274 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 SHISA5Q8N114 240 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 ARHGEF39Q8N4T4 335 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 ALKBH3Q96Q83 286 aaPredicted RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 RASL10BQ96S79 203 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 CHST6Q9GZX3 395 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 RNF7Q9UBF6 113 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 NTNG1Q9Y2I2 539 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 AGAP14A8MT82 685 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 TXNL1O43396 289 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 LYZL6O75951 148 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 HLA-AP01891 365 aaKnown RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 UBE2G1P62253 170 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 P2RY6Q15077 328 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 SPINK14Q6IE38 97 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 LIMS2Q7Z4I7 341 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 THNSL2Q86YJ6 484 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 UBAC2Q8NBM4 344 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 OR5R1Q8NH85 324 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 LRRC29Q8WV35 223 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 NEIL1Q96FI4 390 aaPredicted RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 MFFQ9GZY8 342 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 SLC38A1Q9H2H9 487 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 SAP30LQ9HAJ7 183 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 SLC25A19Q9HC21 320 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 HINT3Q9NQE9 182 aaKnown RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 NKX1-2Q9UD57 310 aaPredicted RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 SF3B6Q9Y3B4 125 aaKnown RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 A3GALT2U3KPV4 340 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 A0A0D9SG52 128 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 AQP7P3A6NL99 342 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 HLA-HP01893 362 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 ANKRD34CP0C6C1 535 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 HOXD11P31277 338 aaPredicted RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 EMDP50402 254 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 RTP5Q14D33 572 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 TMEM215Q68D42 235 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 RFPL4BQ6ZWI9 263 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 OR52I1Q8NGK6 324 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 DYNLRB2Q8TF09 96 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 MYEOVQ96EZ4 313 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 SIGLEC11Q96RL6 698 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 JMJD8Q96S16 334 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 CHRDL1Q9BU40 450 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 ZNF416Q9BWM5 594 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 GAR1Q9NY12 217 aaKnown RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 CGGBP1Q9UFW8 167 aaPredicted RBP3.82□□□□□ -1.8
VCAN-209ENST00000513016 FOXJ3Q9UPW0 622 aa3.82□□□□□ -1.8
VCAN-209ENST00000513016 THSD7AQ9UPZ6 1657 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 MYH3P11055 1940 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 TRDV1A0A1B0GX56 115 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 ZNF705EA8MWA4 302 aaPredicted RBP3.81□□□□□ -1.8
VCAN-209ENST00000513016 CYTIPO60759 359 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 T-ENOLP0DO92 83 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 DUSP1P28562 367 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 MS4A2Q01362 244 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 GK2Q14410 553 aaPredicted RBP3.81□□□□□ -1.8
VCAN-209ENST00000513016 Q56UQ5 140 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 STUMQ69YW2 141 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 KIRREL2Q6UWL6 708 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 DOLPP1Q86YN1 238 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 SUMF2Q8NBJ7 301 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 VSTM2AQ8TAG5 236 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 WDR34Q96EX3 536 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 CNRIP1Q96F85 164 aaPredicted RBP3.81□□□□□ -1.8
VCAN-209ENST00000513016 OR2M2Q96R28 347 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 FAM212BQ9NTI7 297 aaPredicted RBP3.81□□□□□ -1.8
VCAN-209ENST00000513016 PSORS1C1Q9UIG5 152 aa3.81□□□□□ -1.8
VCAN-209ENST00000513016 RCE1Q9Y256 329 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms