RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ARCQ7LC44 396 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 VRK2Q86Y07 508 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 C10orf107Q8IVU9 208 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 SKA3Q8IX90 412 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 FAM71AQ8IYT1 594 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 TCTE3Q8IZS6 198 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 C8orf59Q8N0T1 100 aaPredicted RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 LRRC18Q8N456 261 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ZNF283Q8N7M2 679 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 CCDC71LQ8N9Z2 235 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 NECAP1Q8NC96 275 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 FBXL13Q8NEE6 735 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 OR2M7Q8NG81 312 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 OR10H4Q8NGA5 316 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 OR4K14Q8NGD5 310 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 OR51D1Q8NGF3 324 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 OR5B17Q8NGF7 314 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 OR8J1Q8NGP2 316 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 OR13D1Q8NGV5 346 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 OR10T2Q8NGX3 314 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 OR4A16Q8NH70 328 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 CXorf40AQ8TE69 158 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 C16orf78Q8WTQ4 265 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 CA5BP1Q8WTZ4 195 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 TCTEX1D2Q8WW35 142 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 PIH1D2Q8WWB5 315 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 RPL3LQ92901 407 aaKnown RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 RBPMSQ93062 196 aaKnown RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 TOP1MTQ969P6 601 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 PPWD1Q96BP3 646 aaKnown RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 C12orf43Q96C57 262 aaKnown RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 BIRC7Q96CA5 298 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 TLCD1Q96CP7 247 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 CCDC124Q96CT7 223 aaKnown RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 SLC41A3Q96GZ6 507 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 SH3YL1Q96HL8 342 aaPredicted RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 RNF170Q96K19 258 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 C4orf36Q96KX1 117 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 MBOAT7Q96N66 472 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 GUCD1Q96NT3 240 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 STACQ99469 402 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 S1PR3Q99500 378 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 RBBP8Q99708 897 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 GPA33Q99795 319 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 CITED1Q99966 193 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 UTP23Q9BRU9 249 aaKnown RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 MED10Q9BTT4 135 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 DPH7Q9BTV6 452 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ANKRD60Q9BZ19 345 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 NMNAT2Q9BZQ4 307 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ACTR6Q9GZN1 396 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ING2Q9H160 280 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 RPF2Q9H7B2 306 aaKnown RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 ZNF430Q9H8G1 570 aaPredicted RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 AKIRIN1Q9H9L7 192 aaPredicted RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 GPN2Q9H9Y4 310 aaPredicted RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 FN3KRPQ9HA64 309 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 POPDC2Q9HBU9 364 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 GDF3Q9NR23 364 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 POLE4Q9NR33 117 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 SIRT7Q9NRC8 400 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 TUBG2Q9NRH3 451 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 RDH8Q9NYR8 311 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 TAS2R9Q9NYW1 312 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 STOX2Q9P2F5 926 aaPredicted RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 SLC17A7Q9P2U7 560 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 METTL1Q9UBP6 276 aaKnown RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 KIF25Q9UIL4 384 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ZNF225Q9UK10 706 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 SSR3Q9UNL2 185 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 KLHDC2Q9Y2U9 406 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ZNF337Q9Y3M9 751 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 RNF115Q9Y4L5 304 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 SLCO1B1Q9Y6L6 691 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 MYOM2P54296 1465 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 IQSEC2Q5JU85 1478 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 E9PCH4 1651 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 MYH7BA7E2Y1 1941 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 MYH2Q9UKX2 1941 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 LRRIQ1Q96JM4 1722 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ABCC3O15438 1527 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 LRRC7Q96NW7 1537 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 KDM5DQ9BY66 1539 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 CNTNAP1P78357 1384 aa1.4□□□□□ -2.18
NUP54-208ENST00000508604 TMEM2Q9UHN6 1383 aa1.4□□□□□ -2.18
NUP54-208ENST00000508604 TARBP1Q13395 1621 aaKnown RBP1.4□□□□□ -2.18
NUP54-208ENST00000508604 MYH3P11055 1940 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 NEO1Q92859 1461 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 MBD5Q9P267 1494 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 LTBP1Q14766 1721 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 HSFX4A0A1B0GTS1 333 aaPredicted RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 HSFX3A0A1B0GWH4 333 aaPredicted RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 A0A1W2PQL4 384 aaPredicted RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 TMEM213A2RRL7 107 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 FABP12A6NFH5 140 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 GJE1A6NN92 205 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 PRAMEF26H0Y7S4 382 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 KLRC4-KLRK1H3BQV0 150 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 K7EQM0 130 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 SLC28A1O00337 649 aa1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms